View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5775_low_5 (Length: 412)
Name: NF5775_low_5
Description: NF5775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5775_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 480795 - 480401
Alignment:
| Q |
1 |
aagaacaaatgattaaagaaacgtgacctaaccttttgtttagtggttgaaaagggttgaaaagtgatgaaatagaccaagttaacctaacaatggcaca |
100 |
Q |
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| T |
480795 |
aagaacaaatgattaaagaaatgtgacctaaccttttgtttagtggttgaaaagggttgaaaagtgatgaaatagaccaagttaacctaacaatggcaca |
480696 |
T |
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| Q |
101 |
atgcagagtggttttgattttgggtgattcggttagaaaatcgtaactgttgaaatgaaggaagtttatgagtattgcttatatataggtatgtttcgga |
200 |
Q |
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| T |
480695 |
atgcggagtggttttgattttgggtgattcggttagaaaatcgtaactgttgaaatgaaggaagtttatgagtattgcttatatataggtatgtttcgga |
480596 |
T |
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| Q |
201 |
ttatataatcttaa-nnnnnnnnnnccttcggattattatataatataaatgggagtaaaattgtaataacggaggacgcatgagaaaggcgaagggagg |
299 |
Q |
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| T |
480595 |
ttatataatataaacttttttttttccttcaaattattatataatatgaatgggagtaaaattgtaataacggaggacgcaagagaaaggcgaagggagg |
480496 |
T |
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| Q |
300 |
aaaaagatattctcttcgtattagttcttgtgtgtgcaagaagactagtaacacgtgccccccgtgttaaatgttgtgattctactaggaagtga |
394 |
Q |
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| T |
480495 |
aaaaagaaattctcttcgtattagctcttgtgtgtgcaagaagactagtaacacgtgccccccgtgttaaatgttgtgattctactaggaagtga |
480401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 5982087 - 5982050
Alignment:
| Q |
34 |
ttttgtttagtggttgaaaagggttgaaaagtgatgaa |
71 |
Q |
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| T |
5982087 |
ttttgtttggtggttgaaaagggttgaaatgtgatgaa |
5982050 |
T |
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