View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5775_low_6 (Length: 388)
Name: NF5775_low_6
Description: NF5775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5775_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 281
Target Start/End: Complemental strand, 4246263 - 4245988
Alignment:
| Q |
10 |
aagaatatctttgaatttgagaatgtattcaagcctagcaactatat----cttccaacttacaaaccatatccctatcttcaaagttgaaaaagcgaga |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4246263 |
aagaatatctttgaatttgagaatgtattcaagcctagcaactatatatatcttccaacttaaaaaccatatccctatcttcaaagttgaaaaagcgaga |
4246164 |
T |
|
| Q |
106 |
gaagtagttagtactactcacctgcttctccttgttcttggaaatagaaactttagtagagatgtgatcgagagggtcgtcagctatatagagagcatct |
205 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |
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| T |
4246163 |
gaagtagttagtactactcacatgcttctccttgttcttggaaatagaaactttagtagagatatgatcgagaaggtcgtcagctatatagggagcatct |
4246064 |
T |
|
| Q |
206 |
ttgaggtcatcaagccagttgttaacagcagagtctttgacttgtttctgttcagcatcattaaggacagcttcaa |
281 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4246063 |
ttgaggtcatcaaactagttgttaacagcagagtctttgagttgtttctgttcagcatcattaaggacagcttcaa |
4245988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 10 - 309
Target Start/End: Original strand, 4315120 - 4315416
Alignment:
| Q |
10 |
aagaatatctttgaatttgagaatgtattcaagcctagcaactatatcttccaacttacaaaccatatccctatcttcaaagttgaaaaagcgagagaag |
109 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
4315120 |
aagaatatctttgaacttgagaatgtattcaagtttagcaactatatcttccaacttacaaaccatatcccgttcttcaaagttgaaaaagctagagaag |
4315219 |
T |
|
| Q |
110 |
tagttagtac---tactcacctgcttctccttgttcttggaaatagaaactttagtagagatgtgatcgagagggtcgtcagctatatagagagcatctt |
206 |
Q |
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|||||| | | ||||||||||| |||||| | ||| | |||| ||||| ||||| |||||| | || ||||| | ||| | |||||||| |
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| T |
4315220 |
tagttaacagcggtgctcacctgctt------gttcttctgagtagcagctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagcatctt |
4315313 |
T |
|
| Q |
207 |
tgaggtcatcaagccagttgttaacagcagagtctttgacttgtttctgttcagcatcattaaggacagcttcaacagcataaagagtgttcttcaacct |
306 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4315314 |
tgagatcatcaagccatttgttaacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaacagcataaagagtgttcttcaacct |
4315413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 366
Target Start/End: Original strand, 4306261 - 4306611
Alignment:
| Q |
13 |
aatatctttgaatttgagaatgtattcaagcctagcaactatatcttccaacttacaaaccatatccctatcttcaaagttgaaaaagcgagagaagtag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
4306261 |
aatatctttgaatttgagaatgtattcaagtctagcaactatatctaccaactcacaaaccatatctctttcttcaaagttgaaaaagcgagagaagtag |
4306360 |
T |
|
| Q |
113 |
ttagtactactcacctgcttctccttgttcttggaaatagaaactttagtagagatgtgatcgagagggtcgtcagctatatagagagcatctttgaggt |
212 |
Q |
| |
|
||| | |||||||| || || | ||| ||| | | |||| ||||||||||| |||||| | || |||| | ||| | |||||||||||| | |
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| T |
4306361 |
ttaacaacactcacctcttt---gttttccttcccaattgcagctttggtagagatgtggtcgagaagatcatcagtaaaataaacagcatctttgagat |
4306457 |
T |
|
| Q |
213 |
catcaagccagttgttaacagcagagtctttgacttgtttctgttcagcatcattaaggacagcttcaacagcataaagagtgttcttcaacctttgcac |
312 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||| || |
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|
| T |
4306458 |
catcaagccatttgataacagcagagtctttgagctgtttctgttcagcatcgttcaacacagcttcaacagcataaagagtgttcttcaacctttgaac |
4306557 |
T |
|
| Q |
313 |
cagattgctgtcaaccttctttccaagaataaagtcaaccacctgtggagaagc |
366 |
Q |
| |
|
|| ||| |||||| ||||| ||| | || |||||||| |||| |||||||| |
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|
| T |
4306558 |
caagttgacgtcaactttcttcccacggatcaagtcaacaacctcaggagaagc |
4306611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 366
Target Start/End: Original strand, 4309139 - 4309489
Alignment:
| Q |
10 |
aagaatatctttgaatttgagaatgtattcaagcctagcaactatatcttccaacttacaaaccatatccctatcttcaaagttgaaaaagcgagagaag |
109 |
Q |
| |
|
|||||||| |||| ||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||| |||||||| |||||||| |
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|
| T |
4309139 |
aagaatattattgattttcagaatgtattcaagtctagcaactatgtcttccaacttataaaccatatccctttcttcaaaattgaaaaatggagagaag |
4309238 |
T |
|
| Q |
110 |
tagttagtactactcacctgcttctccttgttcttggaaatagaaactttagtagagatgtgatcgagagggtcgtcagctatatagagagcatctttga |
209 |
Q |
| |
|
||||||||| ||||||| |||||||||||| | ||| | |||| ||| | ||||| |||| | |||| ||||| | ||||| ||| ||||||| |
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|
| T |
4309239 |
tagttagtagtactcac------ctccttgttcttccgagtagcagctttggtacaaatgtggtcgaaaaggtcatcagcaacatagacagcgtctttga |
4309332 |
T |
|
| Q |
210 |
ggtcatcaagccagttgttaacagcagagtctttgacttgtttctgttcagcatcattaaggacagcttcaacagcataaagagtgttcttcaacctttg |
309 |
Q |
| |
|
| ||||| ||||| || |||| |||||||||||||| |||||||| || ||||||| || |||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
4309333 |
gatcatcgagccatttcttaatagcagagtctttgaactgtttctgctccacatcattcagcacagcttccacagcataaagagtgttattcaacctttg |
4309432 |
T |
|
| Q |
310 |
caccagattgctgtcaaccttctttccaagaataaagtcaaccacctgtggagaagc |
366 |
Q |
| |
|
|||| |||| ||| ||| || || ||| | || ||||||| ||||| |||||||| |
|
|
| T |
4309433 |
aaccaaattgatgtaaacttttttcccatggatgaagtcaagaacctgaggagaagc |
4309489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 10 - 369
Target Start/End: Complemental strand, 4253377 - 4253024
Alignment:
| Q |
10 |
aagaatatctttgaatttgagaatgtattcaagcctagcaactatatcttccaacttacaaaccatatccctatcttcaaagttgaaaaagcgagagaag |
109 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||| ||||| |||||||| ||| ||||| ||||||||||||||||||||||| || |
|
|
| T |
4253377 |
aagaatatctttgaatttgagaatggattcaagtttagcaactatattttccagcttacaaagcatgtccctttcttcaaagttgaaaaagcgagataaa |
4253278 |
T |
|
| Q |
110 |
tagttagtactactcacctgcttctccttgttcttggaaatagaaactttagtagagatgtgatcgagagggtcgtcagctatatagagagcatctttga |
209 |
Q |
| |
|
|| |||| | ||||||||||||| || |||| | ||| | |||| || || |||| || ||| |||| ||||||| ||||| | || |||||| |
|
|
| T |
4253277 |
taattagcagtactcacctgctt---gtttttctgtg---tagcagctttggttgaaatgttgtcaagaaggtcatcagctacatagacaacacctttga |
4253184 |
T |
|
| Q |
210 |
ggtcatcaagccagttgttaacagcagagtctttgacttgtttctgttcagcatcattaaggacagcttcaacagcataaagagtgttcttcaacctttg |
309 |
Q |
| |
|
| ||||| | ||| |||||| ||||| || ||||| ||||| || || ||||| |||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
4253183 |
gatcatcgatccatctgttaatagcagggtttttgaactgtttttgctccgcatcgttaaacacagcttccacagcataaagagtgttcttcaacctttg |
4253084 |
T |
|
| Q |
310 |
caccagattgctgtcaaccttctttccaagaataaagtcaaccacctgtggagaagcgag |
369 |
Q |
| |
|
|||| |||| |||||| ||||| ||| | || ||| |||| |||| ||||||||||| |
|
|
| T |
4253083 |
gaccaaattgacgtcaactttcttcccacggatcaagacaacaacctcaggagaagcgag |
4253024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 41932809 - 41932463
Alignment:
| Q |
10 |
aagaatatctttgaatttgagaatgtattcaagcctagcaactatatcttccaacttacaaaccatatccctatcttcaaagttgaaaaagcgagagaag |
109 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||| | |||| |||||||||||||| |||||| || ||||||||||||||||||||||||||| |
|
|
| T |
41932809 |
aagaatatctttgaatttgagaatggattcaagtctagcggcgatattttccaacttacaaaacatatctctttcttcaaagttgaaaaagcgagagaag |
41932710 |
T |
|
| Q |
110 |
tagttagtactactcacctgcttctccttgttcttg---gaaatagaaac---tttagtagagatgtgatcgagagggtcgtcagctatatagagagcat |
203 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| ||| ||| | | |||||||||||||||||| | | ||| ||||| | ||||| ||||| |
|
|
| T |
41932709 |
tagttaagagtactcacctgcttctccttgttcttccaagaagtagcagcagctttagtagagatgtgatccaaaatgtcatcagcaacatagacagcat |
41932610 |
T |
|
| Q |
204 |
ctttgaggtcatcaagccagttgttaacagcagagtctttgacttgtttctgttcagcatcattaaggacagcttcaacagcataaagagtgttcttcaa |
303 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
41932609 |
ctttgagatcatcgagccatttgttaacagcagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagtgttcttcaa |
41932510 |
T |
|
| Q |
304 |
cctttgcaccagattgctgtcaaccttctttccaagaataaagtcaa |
350 |
Q |
| |
|
|||||| | || |||| |||||| ||||| ||| | || ||||||| |
|
|
| T |
41932509 |
cctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaa |
41932463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 156 - 319
Target Start/End: Original strand, 34803279 - 34803442
Alignment:
| Q |
156 |
ctttagtagagatgtgatcgagagggtcgtcagctatatagagagcatctttgaggtcatcaagccagttgttaacagcagagtctttgacttgtttctg |
255 |
Q |
| |
|
|||||||||| |||||||| | | |||| ||||||| ||| | ||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34803279 |
ctttagtagaaatgtgatccaaaaggtcatcagctacataaacagcgtctttgaggtcatcgagccagttgttaacagcagagtctttgatctgtttcta |
34803378 |
T |
|
| Q |
256 |
ttcagcatcattaaggacagcttcaacagcataaagagtgttcttcaacctttgcaccagattg |
319 |
Q |
| |
|
||| ||||||| ||| |||||||| || ||||| |||| |||||||||| ||| |||| |||| |
|
|
| T |
34803379 |
ttccgcatcataaagaacagcttctactgcatatggagtattcttcaaccgttgtaccaaattg |
34803442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 34803146 - 34803247
Alignment:
| Q |
10 |
aagaatatctttgaatttgagaatgtattcaagcctagcaactatatcttccaacttacaaaccatatccctatcttcaaagttgaaaaagcgagagaag |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||| | |||| | ||| |||||| ||||||||||||| |||||||||||||||| |||| ||||| |
|
|
| T |
34803146 |
aagaatatctttgaattttagaatgtattcaagtctagaagctatgttttctaacttaaaaaccatatccctttcttcaaagttgaaaaggcgatagaag |
34803245 |
T |
|
| Q |
110 |
ta |
111 |
Q |
| |
|
|| |
|
|
| T |
34803246 |
ta |
34803247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 277
Target Start/End: Original strand, 6060700 - 6060792
Alignment:
| Q |
185 |
tcagctatatagagagcatctttgaggtcatcaagccagttgttaacagcagagtctttgacttgtttctgttcagcatcattaaggacagct |
277 |
Q |
| |
|
||||||| ||||| |||||||||||| |||| ||||||||||| ||| |||| || || |||||||| |||||||||||||| |||||| |
|
|
| T |
6060700 |
tcagctacatagacagcatctttgagatcattgagccagttgttgacatcagaatccctggtttgtttcttctcagcatcattaagcacagct |
6060792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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