View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5775_low_7 (Length: 358)
Name: NF5775_low_7
Description: NF5775
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5775_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 80 - 346
Target Start/End: Original strand, 18062005 - 18062277
Alignment:
| Q |
80 |
ttctaaaatgtcactagccttttggagcttatcatcatcattgccactatccttttctttatcactctcactatccgtttcaaatctgacttcaaatcta |
179 |
Q |
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| T |
18062005 |
ttctaaaatgtcactagccttttggagcttatcatcatcattgccactatccttttctttatcactatca------gtttcaaatctgacttcaaatcta |
18062098 |
T |
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| Q |
180 |
acatcaaatctgtnnnnnnntctgtaatcaaatctataactggacttgtggaatttttcatttttatcctcctcctgcgga------------nnnnnnn |
267 |
Q |
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| T |
18062099 |
acatcaaatctgtaatcaaatctgtaatcaaatctataactggacttgtgtaatttttcatttttatcctcctcctgcggattattctcattgttattct |
18062198 |
T |
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| Q |
268 |
caatgatattctctataatggaactatcaataccgatttcagaaagcatataaccttcaatacaactattaatgatatt |
346 |
Q |
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| T |
18062199 |
caatgatattatgtataatggaactatcaataccgatttcagaaagcatataaccttcaatacaactattaatgatatt |
18062277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 27008459 - 27008537
Alignment:
| Q |
268 |
caatgatattctctataatggaactatcaataccgatttcagaaagcatataaccttcaatacaactattaatgatatt |
346 |
Q |
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| T |
27008459 |
caatgatattatgtataatggaactatcaataaagatttcagaaagcatataaccttcaatacaactattaatgatatt |
27008537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 18061716 - 18061757
Alignment:
| Q |
80 |
ttctaaaatgtcactagccttttgg-agcttatcatcatcat |
120 |
Q |
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| T |
18061716 |
ttctaaaatgtcactagccttttggtagcttatcatcatcat |
18061757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 27008402 - 27008434
Alignment:
| Q |
223 |
acttgtggaatttttcatttttatcctcctcct |
255 |
Q |
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| T |
27008402 |
acttgtggaatttttcatttttatcctcctcct |
27008434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 9195603 - 9195565
Alignment:
| Q |
296 |
aataccgatttcagaaagcatataaccttcaatacaact |
334 |
Q |
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| T |
9195603 |
aataccgatttcagaaaggatataaccttcaatacaact |
9195565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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