View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5776-Insertion-1 (Length: 1055)
Name: NF5776-Insertion-1
Description: NF5776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5776-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 157 - 599
Target Start/End: Complemental strand, 43729683 - 43729239
Alignment:
| Q |
157 |
atgtaataattaaagtggttgaaatgaatttaagagtaagaggcttaaggtttacaggatccaccagaaaggccaaaagggtacaacaagaatggagaaa |
256 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43729683 |
atgtaataattaaagtggttgaaatgaatttaagagtaagaggcttaaggtttacaggatccaccagaaaggccaaaagggtacaacaagaatggagaaa |
43729584 |
T |
|
| Q |
257 |
atgcaacaaataactttcggctttggattgattctggtgaagaatgtcctaaaggaactgttccaatcagaagaacaacagaacaagattttcttagagc |
356 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43729583 |
atgcaacaaataactttcagctttggattgattctggtgaagaatgtcctaaaggaactgttccaatcagaagaacaacagaacaagattttcttagagc |
43729484 |
T |
|
| Q |
357 |
aagctccataagaagatttggaagaaaaccaagaggtgtacggagagactcaacaggcaatggtcatgaggttagtattagtacctataatttacaaatt |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43729483 |
aagctccataagaagatttggaagaaaaccaagaggtgtacggagagactcaacaggcaatggtcatgaggttagtattagtacctataatttacaaatt |
43729384 |
T |
|
| Q |
457 |
tttactatttgttaatggaaaatgtgttggaaactttgaaaaattgaattt--nnnnnnnnnnnnnnncattgaagggacaccacaacaaaagtttgcct |
554 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43729383 |
tttactatttgttaatggaaaatgtgttgaaaactttgaaaaattgaatttaaaaaaaaaaaaaaaaacattgaagggacaccacaacaaaagtttgcct |
43729284 |
T |
|
| Q |
555 |
cctatttgcatcaaaaagtgacaacaaaatttccattaggagctg |
599 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
43729283 |
cctatttgcatcaaaatgtgacaacaaaatttccattaggagctg |
43729239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 625 - 839
Target Start/End: Complemental strand, 43729214 - 43729001
Alignment:
| Q |
625 |
ctatgtttagtaacaattttgacatacatgttattgcagcatgcagttgtttttgtaaatggagaacaatactatggagcaaaagcaagcataaatgtgt |
724 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43729214 |
ctatgtttagtaataattttgacatacatgttattgcagcatgcagttgtttttgtaaatggagaacaatactatggagcaaaagcaagcataaatgtgt |
43729115 |
T |
|
| Q |
725 |
ggacaccaagggtaactgatcaatatgaattcagcttatcacaaatatgggttattgctggatcatttggtaatgatcttaatacattagaaagctggat |
824 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43729114 |
ggacaccaagggtaactgatcaatatgaattcagcttatcacaaatatgggttattgctggatcatttggtaatgatcttaatacattag-aagctggat |
43729016 |
T |
|
| Q |
825 |
ggcaggcatgtccaa |
839 |
Q |
| |
|
||||||||||||||| |
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|
| T |
43729015 |
ggcaggcatgtccaa |
43729001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 43729822 - 43729705
Alignment:
| Q |
8 |
atctcatcaacaaccagcttttgaccatccactactcaaaggacaaaaaccattggtaattacattttcatccaatgtaacatgttttatcatatcatag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43729822 |
atctcatcaacaaccagcttttgaccatccactactcaaaggacaaaaaccattggtaattacattttcatccaatgtaacatgttttatcatatcatag |
43729723 |
T |
|
| Q |
108 |
tcttaaaaaaggactaag |
125 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
43729722 |
tcttaaaaaaggactaag |
43729705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 892 - 1055
Target Start/End: Complemental strand, 43728952 - 43728799
Alignment:
| Q |
892 |
cttcaaatattttgaagatgttaaatgaaatgttgaaatttctattactaataaatagcatggtatttttcttaacagggtaagttctgagttatatggt |
991 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| |||||||||||||||||| ||||||| |||||| |||| |||| ||||| |||||||||||||| |
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|
| T |
43728952 |
cttcaaatattttgaagatgttaa-tgaa-tgtttgaatttctattactaataa-tagcatg-tatttt-ctta-cagg-taagtcctgagttatatggt |
43728860 |
T |
|
| Q |
992 |
gaataaattatcccagattccttacttattgaccagtaaagtattacatgcttctttttctttt |
1055 |
Q |
| |
|
|| |||||||| |||||| |||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
43728859 |
gat--aattatccaagattctttacttattggacagtaa-gtattacatgcttctttttctttt |
43728799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 6e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 191 - 410
Target Start/End: Complemental strand, 34760689 - 34760470
Alignment:
| Q |
191 |
agtaagaggcttaaggtttacaggatccaccagaaaggccaaaagggtacaacaagaatggagaaaatgcaacaaataactttcggctttggattgattc |
290 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| || ||| |||| ||||||||||| | | | | || | | | |||| |||||| |
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|
| T |
34760689 |
agtaagagggttaaggtttacaggatccaccagaaaggccaaatggatactacaacaatggagaaaaggttagtgagaggttacagttgtggactgattc |
34760590 |
T |
|
| Q |
291 |
tggtgaagaatgtcctaaaggaactgttccaatcagaagaacaacagaacaagattttcttagagcaagctccataagaagatttggaagaaaaccaaga |
390 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| | ||| |||| |||||||| || || | |||||||||||| ||||||| | |
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|
| T |
34760589 |
tggtgaagaatgtccagaaggaactgttccaatcagaagaacaacagaagatgatattctaagagcaagttctatcaaaagatttggaaggaaaccaaaa |
34760490 |
T |
|
| Q |
391 |
ggtgtacggagagactcaac |
410 |
Q |
| |
|
||| |||||||| ||||| |
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|
| T |
34760489 |
cctgttcggagagattcaac |
34760470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 655 - 838
Target Start/End: Complemental strand, 34759963 - 34759781
Alignment:
| Q |
655 |
ttattgcagcatgcagttgtttttgtaaatggagaacaatactatggagcaaaagcaagcataaatgtgtggacaccaagggtaactgatcaatatgaat |
754 |
Q |
| |
|
||||| ||||||||| || |||||||||||||| | ||||||| ||||||||| |||| ||||||||||||| |||| ||||| ||| |||||||| |
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|
| T |
34759963 |
ttattacagcatgcaattctttttgtaaatggaaatcaatactttggagcaaaggcaaacataaatgtgtgggcacctcatgtaacagatggatatgaat |
34759864 |
T |
|
| Q |
755 |
tcagcttatcacaaatatgggttattgctggatcatttggtaatgatcttaatacattagaaagctggatggcaggcatgtcca |
838 |
Q |
| |
|
| ||||| ||||| ||||||||||||||||| || |||||||||||||| ||||| ||| ||||||| ||||||||||||||| |
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|
| T |
34759863 |
ttagcttgtcacagatatgggttattgctggctcctttggtaatgatctcaataccctag-aagctggttggcaggcatgtcca |
34759781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 661 - 806
Target Start/End: Complemental strand, 14496745 - 14496600
Alignment:
| Q |
661 |
cagcatgcagttgtttttgtaaatggagaacaatactatggagcaaaagcaagcataaatgtgtggacaccaagggtaactgatcaatatgaattcagct |
760 |
Q |
| |
|
||||||||||||| | ||| | |||| | ||||||||||||||||| || |||||||| |||||| | ||| | ||| | | |||||||||||||||| |
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|
| T |
14496745 |
cagcatgcagttggatatgtgactggaaatcaatactatggagcaaaggctagcataaacgtgtgggccccacgtgtagcaaaccaatatgaattcagct |
14496646 |
T |
|
| Q |
761 |
tatcacaaatatgggttattgctggatcatttggtaatgatcttaa |
806 |
Q |
| |
|
| || ||||| ||||| ||| |||| |||||||| |||||||||| |
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|
| T |
14496645 |
tgtcccaaatgtgggtcatttctggttcatttggagatgatcttaa |
14496600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 29253772 - 29253828
Alignment:
| Q |
9 |
tctcatcaacaaccagcttttgaccatccactactcaaaggacaaaaaccattggta |
65 |
Q |
| |
|
|||||| |||||||||||||||| ||||| ||| | ||||||||||||||||||||| |
|
|
| T |
29253772 |
tctcataaacaaccagcttttgatcatcctctattgaaaggacaaaaaccattggta |
29253828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 29245461 - 29245516
Alignment:
| Q |
10 |
ctcatcaacaaccagcttttgaccatccactactcaaaggacaaaaaccattggta |
65 |
Q |
| |
|
||||| |||||||||||||||| ||||| || | ||||||||||||||||||||| |
|
|
| T |
29245461 |
ctcataaacaaccagcttttgatcatcctttattgaaaggacaaaaaccattggta |
29245516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 29310872 - 29310921
Alignment:
| Q |
16 |
aacaaccagcttttgaccatccactactcaaaggacaaaaaccattggta |
65 |
Q |
| |
|
|||||||||||||||| ||||| || | ||||||||||||||||||||| |
|
|
| T |
29310872 |
aacaaccagcttttgatcatcctttattgaaaggacaaaaaccattggta |
29310921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 30931384 - 30931328
Alignment:
| Q |
9 |
tctcatcaacaaccagcttttgaccatccactactcaaaggacaaaaaccattggta |
65 |
Q |
| |
|
|||||| |||||||||||||||| ||||| ||| | ||||||||||||||||||||| |
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|
| T |
30931384 |
tctcataaacaaccagcttttgatcatcctctattgaaaggacaaaaaccattggta |
30931328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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