View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5776-Insertion-3 (Length: 750)
Name: NF5776-Insertion-3
Description: NF5776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5776-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 6 - 400
Target Start/End: Original strand, 7452293 - 7452685
Alignment:
| Q |
6 |
catttagttgtatccatttccattacgtttttgacatcatactaccatataggttttaatttttaatctctaaccaccggaatattttgatctaccaccc |
105 |
Q |
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| T |
7452293 |
catttagttgtatccatttccattacgtttttgacatcatactaccatataggttttaatttttaatctctaaccaccggaatattttgatctaccaccc |
7452392 |
T |
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| Q |
106 |
accccaaacctatttcactagtttctttaattgttgacaagagcattgcatttgcataaccttnnnnnnnnttgaatacttcagttaatgaaatagagtc |
205 |
Q |
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| T |
7452393 |
accccaaacctatttcactagtttctttaattgttgacaagagcattgcatttgcataaccttaaaaaaaattgaatacttcagttaatgaaatagagtc |
7452492 |
T |
|
| Q |
206 |
caacacaaatttaaattgatgtcaattacttagtaacaacaattaggacacaaatatagggagtatgcatcacttgtcacatctaacatatatggttgaa |
305 |
Q |
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| T |
7452493 |
caacacaaatttaaattgatgtcaattacttagtaacaacaattaggacacaaatatagggagtatgcatcacttgtcacatctaacatatatggttgaa |
7452592 |
T |
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| Q |
306 |
gtaaaatgaannnnnnnnnnnnnatgtcaattcaacatgcttgtctagttgtctacctaggaaaagcaagcaatgtaaaacactgattttgatcc |
400 |
Q |
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| T |
7452593 |
gtaaaatgaa--acacacacacaatgtcaattcaacatgcttgtctagttgtctacctaggaaaagcaagcaatgtaaaacactgattttgatcc |
7452685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 452 - 739
Target Start/End: Original strand, 7452737 - 7453015
Alignment:
| Q |
452 |
gactagttacatgatataatttagggtcgtcgacaatgagctttgcacatatggtagcagtcatagaaacaaggtccaccacagtgaagaggacaatcca |
551 |
Q |
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| T |
7452737 |
gactagttacatgatataatttagggtcgtcgacaatgagctttgcacatatggtagcagtcatagaaacaaggtccaccacagtgaagaggacaatcca |
7452836 |
T |
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| Q |
552 |
acctcatacctttgcaccttgttcttgtcatgcattgtgcaaattcccctaacctatactcttccttggatgcatgttcatgttgttgatgatgatgctt |
651 |
Q |
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| T |
7452837 |
acctcatacctttgcaccttgttcttgtcatgcattgtgcaaattcccctaacctatactcttccttagatgca---------tgttgatgatgatgctt |
7452927 |
T |
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| Q |
652 |
catgccctttatagttcctttcttccctttaacatgtgatcttggttcacctctacacccccatttccaccaaccaccccctccacct |
739 |
Q |
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| T |
7452928 |
catgccccttatagttcctttcttccctttaacatgtgatcttggttcacctctacacccccatttccaccaaccaccccctccacct |
7453015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 477 - 594
Target Start/End: Original strand, 52826916 - 52827033
Alignment:
| Q |
477 |
gtcgtcgacaatgagctttgcacatatggtagcagtcatagaaacaaggtccaccacagtgaagaggacaatccaacctcatacctttgcaccttgttct |
576 |
Q |
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|||| |||||||||||||| |||||||||| || |||||| |||| ||||||||||| |||||||| || ||||| ||||| || ||||| | ||| | |
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| T |
52826916 |
gtcggcgacaatgagctttacacatatggtgacaatcatagtaacatggtccaccacaatgaagagggcagtccaatctcattcccttgcatcgagtttt |
52827015 |
T |
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| Q |
577 |
tgtcatgcattgtgcaaa |
594 |
Q |
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|||||||||||||||||| |
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| T |
52827016 |
tgtcatgcattgtgcaaa |
52827033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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