View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5776-Insertion-4 (Length: 627)

Name: NF5776-Insertion-4
Description: NF5776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5776-Insertion-4
NF5776-Insertion-4
[»] chr5 (6 HSPs)
chr5 (7-627)||(41722830-41723449)
chr5 (7-577)||(41718154-41718723)
chr5 (7-343)||(34359934-34360269)
chr5 (22-343)||(34352226-34352546)
chr5 (13-343)||(29585310-29585640)
chr5 (569-627)||(34359609-34359667)
[»] chr2 (17 HSPs)
chr2 (10-411)||(5198662-5199062)
chr2 (14-292)||(15602905-15603183)
chr2 (7-166)||(825632-825792)
chr2 (7-166)||(830288-830448)
chr2 (12-270)||(28715816-28716068)
chr2 (8-294)||(30396916-30397191)
chr2 (216-300)||(830205-830291)
chr2 (216-300)||(825549-825635)
chr2 (16-163)||(31592923-31593068)
chr2 (72-223)||(13843865-13844014)
chr2 (98-225)||(8004167-8004292)
chr2 (12-225)||(13840249-13840456)
chr2 (568-627)||(829899-829958)
chr2 (23-138)||(12175768-12175881)
chr2 (18-67)||(9358158-9358207)
chr2 (64-173)||(42117769-42117876)
chr2 (567-627)||(13840763-13840823)
[»] chr4 (18 HSPs)
chr4 (7-411)||(48701825-48702228)
chr4 (7-411)||(48697135-48697539)
chr4 (12-341)||(42265883-42266211)
chr4 (12-341)||(42270602-42270930)
chr4 (12-342)||(24520034-24520363)
chr4 (13-411)||(30945487-30945901)
chr4 (7-411)||(30950187-30950607)
chr4 (7-294)||(10427315-10427593)
chr4 (16-211)||(48782850-48783031)
chr4 (560-627)||(42270323-42270390)
chr4 (570-627)||(48697661-48697718)
chr4 (127-255)||(1979253-1979375)
chr4 (570-626)||(30946023-30946079)
chr4 (56-154)||(17248015-17248112)
chr4 (14-82)||(30165900-30165968)
chr4 (69-107)||(1979567-1979604)
chr4 (14-82)||(36615370-36615438)
chr4 (434-527)||(48781266-48781360)
[»] chr3 (13 HSPs)
chr3 (7-342)||(5823279-5823613)
chr3 (7-343)||(5818517-5818852)
chr3 (7-411)||(2817267-2817658)
chr3 (7-300)||(54545902-54546196)
chr3 (7-156)||(24659140-24659287)
chr3 (12-117)||(4579254-4579359)
chr3 (17-189)||(31204781-31204950)
chr3 (560-627)||(54545565-54545632)
chr3 (156-294)||(24671173-24671301)
chr3 (41-198)||(35977103-35977258)
chr3 (557-623)||(5819102-5819168)
chr3 (169-294)||(4579126-4579241)
chr3 (567-604)||(42589352-42589389)
[»] chr6 (16 HSPs)
chr6 (7-343)||(26976135-26976470)
chr6 (7-342)||(1234680-1235014)
chr6 (7-341)||(27873994-27874327)
chr6 (7-411)||(27878713-27879134)
chr6 (7-294)||(18967912-18968190)
chr6 (13-278)||(30986552-30986819)
chr6 (49-291)||(30966683-30966923)
chr6 (16-194)||(21966677-21966852)
chr6 (22-171)||(23012520-23012667)
chr6 (560-627)||(27874539-27874606)
chr6 (557-623)||(26976720-26976786)
chr6 (569-627)||(30968571-30968629)
chr6 (572-626)||(18967489-18967543)
chr6 (7-54)||(30967674-30967721)
chr6 (569-627)||(21966546-21966604)
chr6 (567-604)||(1472341-1472378)
[»] chr8 (5 HSPs)
chr8 (7-342)||(9439376-9439710)
chr8 (7-342)||(9444096-9444430)
chr8 (560-627)||(9439921-9439988)
chr8 (20-76)||(4799315-4799371)
chr8 (567-604)||(24594367-24594404)
[»] chr7 (8 HSPs)
chr7 (12-294)||(16183640-16183913)
chr7 (12-300)||(30235038-30235330)
chr7 (12-225)||(8139973-8140183)
chr7 (13-189)||(8138470-8138645)
chr7 (16-161)||(5102606-5102749)
chr7 (572-627)||(2323956-2324011)
chr7 (13-118)||(36528425-36528529)
chr7 (567-604)||(7504639-7504676)
[»] scaffold0074 (2 HSPs)
scaffold0074 (7-294)||(27230-27508)
scaffold0074 (572-627)||(27877-27932)
[»] chr1 (3 HSPs)
chr1 (12-294)||(46191266-46191537)
chr1 (14-189)||(30697126-30697300)
chr1 (15-189)||(4130215-4130389)


Alignment Details
Target: chr5 (Bit Score: 581; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 7 - 627
Target Start/End: Complemental strand, 41723449 - 41722830
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723449 aggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 41723350  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||    
T  41723349 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctct 41723250  T
Q  207 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 306  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  41723249 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 41723151  T
Q  307 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723150 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 41723051  T
Q  407 tttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtcaaaca 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41723050 tttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtcaaaca 41722951  T
Q  507 tgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagc 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722950 tgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagc 41722851  T
Q  607 ttccaaaatctctctaccttg 627  Q
    |||||||||||||||||||||    
T  41722850 ttccaaaatctctctaccttg 41722830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 7 - 577
Target Start/End: Complemental strand, 41718723 - 41718154
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718723 aggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 41718624  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||    
T  41718623 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctct 41718524  T
Q  207 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 306  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  41718523 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 41718425  T
Q  307 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718424 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 41718325  T
Q  407 tttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaagcccttttgtcaaaca 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41718324 tttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaaacccttttgtcaaaca 41718225  T
Q  507 tgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcaca 577  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718224 tgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtgttcacacatgttcaca 41718154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 7 - 343
Target Start/End: Complemental strand, 34360269 - 34359934
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34360269 aggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaacaaata 34360170  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  34360169 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctct 34360070  T
Q  207 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 306  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34360069 cttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaacaag 34359971  T
Q  307 ctttacttgttcttgtgttgttactgatttgggatga 343  Q
    |||||||||||||||||||||||||||||||||||||    
T  34359970 ctttacttgttcttgtgttgttactgatttgggatga 34359934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 22 - 343
Target Start/End: Complemental strand, 34352546 - 34352226
Alignment:
Q  22 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352546 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 34352447  T
Q  122 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctctcttataaataggaga 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  34352446 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttataaataggaga 34352347  T
Q  222 atacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagctttacttgttcttg 321  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34352346 atactaactaacacaaactaggagaaatctcacaggagaaactaatttttctctctatattttttctctcacta-tctaaacaagctttacttgttcttg 34352248  T
Q  322 tgttgttactgatttgggatga 343  Q
    ||||||||||||||||||||||    
T  34352247 tgttgttactgatttgggatga 34352226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 13 - 343
Target Start/End: Original strand, 29585310 - 29585640
Alignment:
Q  13 cagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggga 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585310 cagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggga 29585409  T
Q  113 aaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctctcttata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||    
T  29585410 aaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaagagagtacaattaccactctctcttata 29585509  T
Q  213 aataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagctttac 312  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  29585510 aataggagaatactaactaatacaaactaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactactctagacaagctttac 29585609  T
Q  313 ttgttcttgtgttgttactgatttgggatga 343  Q
    ||||| |||||||||||||||||||||||||    
T  29585610 ttgttgttgtgttgttactgatttgggatga 29585640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 569 - 627
Target Start/End: Complemental strand, 34359667 - 34359609
Alignment:
Q  569 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttg 627  Q
    |||||||||||||||||||||||||||||||||||||| | |||| | |||||||||||    
T  34359667 atgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtatctctaccttg 34359609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 10 - 411
Target Start/End: Original strand, 5198662 - 5199062
Alignment:
Q  10 tgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198662 tgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg 5198761  T
Q  110 ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctctctt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||    
T  5198762 ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctctctt 5198861  T
Q  210 ataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagctt 309  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||    
T  5198862 ataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagctt 5198960  T
Q  310 tacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcattt 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||    
T  5198961 tacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcattt 5199060  T
Q  410 at 411  Q
    ||    
T  5199061 at 5199062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 15603183 - 15602905
Alignment:
Q  14 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa 113  Q
    ||||||| ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603183 agagtaagaaaatattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa 15603084  T
Q  114 aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctctcttataa 213  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||| |||||||||||  ||| |||| |||    
T  15603083 aaaaccacggggcaagagtagagaactttcactaagtagaagaaattacaagacctctctctaaatgcatggagtgtacaattaccattctatcttgtaa 15602984  T
Q  214 ataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctca 292  Q
    |||||||||||| |||||||||  |||| ||||||||||| || | || ||||||||||| ||||||||||| ||||||    
T  15602983 ataggagaatactaactaacacttactaagagaaacctcatagaaaaatctaatttttctttctatatttttcctctca 15602905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 825792 - 825632
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  825792 aggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaata 825693  T
Q  107 aggggaa-aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 166  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  825692 aggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 830448 - 830288
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830448 aggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 830349  T
Q  107 aggggaa-aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 166  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  830348 aggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga 830288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 28716068 - 28715816
Alignment:
Q  12 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 111  Q
    ||||||||||||||||||||||| ||  ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||  ||||||||||    
T  28716068 ccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatattt-acgtggaaacccctcattaaataagggg 28715970  T
Q  112 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctctcttat 211  Q
    ||||| ||||  |  |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |  | || |||    
T  28715969 aaaaa-ccacaagagaagaatagagaactttcacaaagtggaagaaattacaggacatctctctaaatgcaaggagagtacaattaccaccgtttcctat 28715871  T
Q  212 aaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttt 270  Q
    ||||||||||||    |||||||| | ||||||||||||| ||| ||||||||| ||||    
T  28715870 aaataggagaat----actaacactacctaggagaaaccttacaagagaaactattttt 28715816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 8 - 294
Target Start/End: Original strand, 30396916 - 30397191
Alignment:
Q  8 ggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 107  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||    
T  30396916 ggtgccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaataa 30397013  T
Q  108 ggggaaaaaaccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctct 206  Q
    ||| |||||| ||| |||| |||||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||||||||   ||||||| |||| |    
T  30397014 gggaaaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctctttctatatacaaggagagacaaattacc-ctctat 30397112  T
Q  207 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 294  Q
     ||  |||||||||||||  |||        ||||||||||| ||||||||||||||||  ||| ||||||||||| || ||||||||    
T  30397113 gtt-gaaataggagaatattaac--------actaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact 30397191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 830291 - 830205
Alignment:
Q  216 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta 300  Q
    ||||||||||||||  |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  830291 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta 830205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 825635 - 825549
Alignment:
Q  216 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta 300  Q
    ||||||||||||||  |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  825635 aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactattcta 825549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 31592923 - 31593068
Alignment:
Q  16 agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa 115  Q
    ||||||| ||||||||||| ||| || ||||||||||||||||||||||||  |||| |||||| |||||||||||| | ||||| |||||| |  ||||    
T  31592923 agtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaataaataa-gaaaaaa 31593021  T
Q  116 aaccacggggcaagagtagagaactttcactaagtggaagaaattaca 163  Q
    ||||||  |  ||||||||||||||||||||||  | |||||||||||    
T  31593022 aaccac-agataagagtagagaactttcactaaccgaaagaaattaca 31593068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 13843865 - 13844014
Alignment:
Q  72 acacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctct 171  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||   |  ||  || |||| |||| ||||| ||||||||||||||||||||||| ||    
T  13843865 acacaatattt-acgtggaaacccctcaacaaataaggagaaaaatt-ataggttaaaagtatagaattttcattaagtggaagaaattacaggacccct 13843962  T
Q  172 ctctaaatacaaggagagtacaattaccgctctctcttataaataggagaat 223  Q
     | |||||||||| ||| || ||||||| |||| | ||| ||||||||||||    
T  13843963 ttataaatacaagaagaataaaattaccactctattttaaaaataggagaat 13844014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 8004292 - 8004167
Alignment:
Q  98 caacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaatta 197  Q
    ||||||||||| ||||||| | |||||| | || |||| |||||||||| | |||||||||||| |  |||||||| |||||  ||| ||||||||||||    
T  8004292 caacaaataagaggaaaaa-caacggggtatgactagaaaactttcactgaatggaagaaattataaaacctctctttaaatgtaagaagagtacaatta 8004194  T
Q  198 ccgctctctcttataaataggagaatac 225  Q
     | |||||||||||||||||||||||||    
T  8004193 -cactctctcttataaataggagaatac 8004167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 13840249 - 13840456
Alignment:
Q  12 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 111  Q
    ||||| |||||||||||||||||| |  || ||||| ||| |||||| ||||||| |||||||  |||||| || ||  ||  |||||||||| ||||||    
T  13840249 ccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca--atattt-acatgagaattcctcaacaaacaagggg 13840345  T
Q  112 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctctcttat 211  Q
     ||||  || || ||||||||||| || ||| || ||||  || ||||||||  ||||||||||||||| |||||||||||||||||   |||||||||     
T  13840346 gaaaa--catggagcaagagtagaaaatttttaccaagtaaaa-aaattacaaaacctctctctaaatataaggagagtacaattacaattctctcttaa 13840442  T
Q  212 aaataggagaatac 225  Q
    |||||  |||||||    
T  13840443 aaataaaagaatac 13840456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 568 - 627
Target Start/End: Complemental strand, 829958 - 829899
Alignment:
Q  568 catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttg 627  Q
    |||||||||||| ||||||||||||  |||||||||||| | |||| |||||||||||||    
T  829958 catgttcacaatatcccacttaaagctacttttgtgagcattcaaagtctctctaccttg 829899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 12175768 - 12175881
Alignment:
Q  23 aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacg 122  Q
    ||||||||||||||| ||||||||| ||| || |||| || || |||||||||||||||||  ||||||||  ||||| ||||||  ||||||||| |      
T  12175768 aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt-tgtggaaacatctcaataaataa-tggaaaaaacaatt 12175865  T
Q  123 gggcaagagtagagaa 138  Q
    || |||||||||||||    
T  12175866 ggacaagagtagagaa 12175881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 9358158 - 9358207
Alignment:
Q  18 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaact 67  Q
    |||| ||||||||| |||||||||||| || ||||||||||||| |||||    
T  9358158 taaccaaatattattacgcagctaaaacaacagacgagaaaagaagaact 9358207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 42117876 - 42117769
Alignment:
Q  64 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 163  Q
    ||||||||| ||||||||| |||| |||||| |||||  |||||||||| ||||||||| | ||| |||||| |||||||| |||  |  |||||||| |    
T  42117876 aactgaacatacaatattt-acgtagaaacctctcaattaataagggga-aaaaccacgagacaaaagtagataactttcattaaacgagagaaattata 42117779  T
Q  164 ggacctctct 173  Q
     |||||||||    
T  42117778 agacctctct 42117769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 627
Target Start/End: Original strand, 13840763 - 13840823
Alignment:
Q  567 acatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttg 627  Q
    ||||||| |||||||| ||||||||   ||||||||||||||| ||||| ||||| |||||    
T  13840763 acatgtttacaatctctcacttaaatctacttttgtgagcttctaaaatttctctgccttg 13840823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Original strand, 48701825 - 48702228
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701825 aggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 48701924  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||    
T  48701925 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctct 48702024  T
Q  207 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 306  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  48702025 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 48702123  T
Q  307 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttca 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |||||| || ||    
T  48702124 ctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgca 48702223  T
Q  407 tttat 411  Q
    |||||    
T  48702224 tttat 48702228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 7 - 411
Target Start/End: Original strand, 48697135 - 48697539
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697135 aggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 48697234  T
Q  107 aggggaaaa-aaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctc 205  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||    
T  48697235 aggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctc 48697334  T
Q  206 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaa 305  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||    
T  48697335 tcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaa 48697433  T
Q  306 gctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttc 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |  | || ||||||||| |||||| || |    
T  48697434 gctttacttgttcttgtgttgttactgatttgggatgagtagaataatgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgc 48697533  T
Q  406 atttat 411  Q
    ||||||    
T  48697534 atttat 48697539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 341
Target Start/End: Complemental strand, 42266211 - 42265883
Alignment:
Q  12 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266211 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 42266112  T
Q  112 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctctcttat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42266111 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat 42266012  T
Q  212 aaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagcttta 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||    
T  42266011 aaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaacaagcttta 42265913  T
Q  312 cttgttcttgtgttgttactgatttgggat 341  Q
    ||||||||||||||||||||||||||||||    
T  42265912 cttgttcttgtgttgttactgatttgggat 42265883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 341
Target Start/End: Complemental strand, 42270930 - 42270602
Alignment:
Q  12 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270930 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 42270831  T
Q  112 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctctcttat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42270830 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctctcttat 42270731  T
Q  212 aaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagcttta 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||    
T  42270730 aaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaacaagcttta 42270632  T
Q  312 cttgttcttgtgttgttactgatttgggat 341  Q
    ||||||||||||||||||||||||||||||    
T  42270631 cttgttcttgtgttgttactgatttgggat 42270602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 24520034 - 24520363
Alignment:
Q  12 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 111  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520034 ccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 24520133  T
Q  112 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctctcttat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  24520134 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctctcttat 24520233  T
Q  212 aaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaagcttta 311  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||    
T  24520234 aaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaagcttta 24520332  T
Q  312 cttgttcttgtgttgttactgatttgggatg 342  Q
    |||||||||||||||||||||||||||||||    
T  24520333 cttgttcttgtgttgttactgatttgggatg 24520363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 411
Target Start/End: Original strand, 30945487 - 30945901
Alignment:
Q  13 cagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggga 112  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30945487 cagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg-a 30945585  T
Q  113 aaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctctcttata 212  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  30945586 aaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggagagtacaattaccactctctcttata 30945685  T
Q  213 aataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta-----aacaa 305  Q
    |||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||     |||||    
T  30945686 aataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaagaacaa 30945785  T
Q  306 ---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctc 395  Q
             |  |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |    
T  30945786 gtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgcccc 30945885  T
Q  396 aaccattttcatttat 411  Q
    ||||| || |||||||    
T  30945886 aaccaattgcatttat 30945901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 7 - 411
Target Start/End: Original strand, 30950187 - 30950607
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950187 aggtaccagagtaacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 30950286  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctct 206  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||    
T  30950287 aggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctctaaatacaaggaaagtacaattaccactctct 30950385  T
Q  207 cttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta---- 300  Q
    |||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||        
T  30950386 cttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaa 30950485  T
Q  301 -aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagcca 389  Q
     |||||         |  |||| ||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || |||||    
T  30950486 gaacaagtagttgttgtgttactttgttatggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagcca 30950585  T
Q  390 tgcctcaaccattttcatttat 411  Q
    |||| |||||| || |||||||    
T  30950586 tgccccaaccaattgcatttat 30950607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 7 - 294
Target Start/End: Complemental strand, 10427593 - 10427315
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10427593 aggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaacaaata 10427494  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccgctctc 205  Q
    |||||||||||| |||||| || |||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||||| |||||    
T  10427493 aggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattacc-ctctc 10427395  T
Q  206 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 294  Q
    ||||  |||||||||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  10427394 tctt-gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 10427315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 48783031 - 48782850
Alignment:
Q  16 agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa 115  Q
    |||| ||||||||||||||||   |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||   |||||||||||| |||||||    
T  48783031 agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaata-tttacgtggaaatttctcaacaaataaagggaaaa 48782933  T
Q  116 aaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctctcttat 211  Q
    |  || |||         |||||||||||||||||||||||||||| | |||||||||||||||||| |  ||||||||||||| |||||||||||    
T  48782932 a--catggg---------gagaactttcactaagtggaagaaattagatgacctctctctaaatacatg--gagtacaattaccactctctcttat 48782850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 560 - 627
Target Start/End: Complemental strand, 42270390 - 42270323
Alignment:
Q  560 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttg 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||    
T  42270390 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttg 42270323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 570 - 627
Target Start/End: Original strand, 48697661 - 48697718
Alignment:
Q  570 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttg 627  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  48697661 tgttcacaatctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttg 48697718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 127 - 255
Target Start/End: Complemental strand, 1979375 - 1979253
Alignment:
Q  127 aagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctctcttataaataggagaataca 226  Q
    ||||||||| |||||||| |||| ||||||||||||| |||||||||  |||| ||||||| ||| | ||||| |||||||||||||| ||||||||       
T  1979375 aagagtagataactttcagtaagaggaagaaattacacgacctctct--aaatgcaaggagggtatatttaccactctctcttataaacaggagaat--- 1979281  T
Q  227 aactaacacaaactaggagaaacctcaca 255  Q
     |||| ||| ||| |||||||||||||||    
T  1979280 -actagcactaaccaggagaaacctcaca 1979253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 570 - 626
Target Start/End: Original strand, 30946023 - 30946079
Alignment:
Q  570 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctacctt 626  Q
    |||||||| |||||||||||||||||||||||||||||  |||||||||||||||||    
T  30946023 tgttcacagtctcccacttaaagtcacttttgtgagctctcaaaatctctctacctt 30946079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 17248112 - 17248015
Alignment:
Q  56 aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa 154  Q
    ||||||| |||| || ||||||||||| || |||||| |||| || |||||||||||||||||||| ||  ||||||| |||||||||| |||||||||    
T  17248112 aaaagagaaactaaatacacaatattt-acatggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaa 17248015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
Q  14 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt 82  Q
    |||||||||||||| |||||| || ||||||||||| | ||||||| | ||| |||||||| |||||||    
T  30165968 agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt 30165900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
Q  69 aacacacaatattttacgtggaaacccctcaacaaataa 107  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1979604 aacacacaatattt-acgtggaaacccctcaacaaataa 1979567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 36615370 - 36615438
Alignment:
Q  14 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt 82  Q
    ||||||| ||||||||||| | ||| |||||||||| | |||||||||| ||| ||||| ||| |||||    
T  36615370 agagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt 36615438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 434 - 527
Target Start/End: Complemental strand, 48781360 - 48781266
Alignment:
Q  434 gccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaa--gcccttttgtcaaacatgtattactgccatgtgaaaa 527  Q
    ||||||||||||||||||| ||| |  ||||| ||||| | |||| ||||| |||||  ||||||| ||||||||  | |||||||||||||||||    
T  48781360 gccaaccaatttatgttgaaaatatatgcaccaaaaatataaatgttaaat-gcaaaaagccctttcgtcaaacaccttttactgccatgtgaaaa 48781266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 342
Target Start/End: Original strand, 5823279 - 5823613
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823279 aggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 5823378  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  5823379 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctct 5823478  T
Q  207 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 306  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  5823479 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 5823577  T
Q  307 ctttacttgttcttgtgttgttactgatttgggatg 342  Q
    ||||||||||||||||||||||||||||||||||||    
T  5823578 ctttacttgttcttgtgttgttactgatttgggatg 5823613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 7 - 343
Target Start/End: Original strand, 5818517 - 5818852
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5818517 aggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaactaata 5818616  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  5818617 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctct 5818716  T
Q  207 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 306  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  5818717 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 5818815  T
Q  307 ctttacttgttcttgtgttgttactgatttgggatga 343  Q
    |||||||||||||||||||||||||||||||||||||    
T  5818816 ctttacttgttcttgtgttgttactgatttgggatga 5818852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 411
Target Start/End: Original strand, 2817267 - 2817658
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817267 aggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 2817366  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac--cgctct 204  Q
    | ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| ||  | ||||    
T  2817367 a-gggaaaaaaccacagggcaagagtaaagaactctcactaagtggaagaaattacaagaactctctctaaatacaaggagagtacaatcaccactctct 2817465  T
Q  205 ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaaca 304  Q
    ||||||||||||||||||||| |||||| |||||||              ||||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  2817466 ctcttataaataggagaatactaactaatacaaact--------------aggagaaactatttttcctctctatattttttctctcattaccctaaaca 2817551  T
Q  305 agctttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccatttt 404  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |  | || ||||||||| |||||| ||     
T  2817552 agttttacttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatgtatactagtgaaagagccatgccccaaccaattg 2817651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 54546196 - 54545902
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  54546196 aggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaacaaata 54546098  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctct 206  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  54546097 aggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctctaactacaaggagagtacaattaccactctct 54545998  T
Q  207 cttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta 300  Q
    |||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  54545997 cttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta 54545902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 24659140 - 24659287
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24659140 aggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaacaaata 24659239  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 156  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  24659240 aggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga 24659287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 4579359 - 4579254
Alignment:
Q  12 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 111  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579359 ccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 4579260  T
Q  112 aaaaaa 117  Q
    ||||||    
T  4579259 aaaaaa 4579254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 31204781 - 31204950
Alignment:
Q  17 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 116  Q
    |||||||||||||| ||||||| ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||    
T  31204781 gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaa 31204878  T
Q  117 accacgg-ggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 189  Q
    | ||||| ||||| ||||||||||||||||||||||| | ||||||||  ||  ||||||||||| ||||||||    
T  31204879 atcacggaggcaatagtagagaactttcactaagtgggaaaaattacaaaac--ctctctaaatataaggagag 31204950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 560 - 627
Target Start/End: Complemental strand, 54545632 - 54545565
Alignment:
Q  560 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttg 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||  ||||||||||||    
T  54545632 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagcctctctaccttg 54545565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 156 - 294
Target Start/End: Original strand, 24671173 - 24671301
Alignment:
Q  156 aaattacaggacctctctctaaatacaaggagagtacaattaccgctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcaca 255  Q
    |||||||| ||| |||||||||||||||||||||   ||||||| |||||||||  |||||||||||||| |||        ||||||||||||||||||    
T  24671173 aaattacaagacttctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcaca 24671262  T
Q  256 ggagaaactaatttttctctctatattttttctctcact 294  Q
    ||||||||||  ||| |||||||||||||| ||||||||    
T  24671263 ggagaaactatatttcctctctatatttttcctctcact 24671301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 35977258 - 35977103
Alignment:
Q  41 aaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtaga-gaac 139  Q
    ||||||||||  |||||||||| || |||||| ||||||||| ||||  ||| || |||||| |||  ||||||||  |||  |||||||||| | ||      
T  35977258 aaaataagaggtgagaaaagagaaattgaacaaacaatattt-acgtaaaaaaccatcaacatata--gggaaaaactcacttggcaagagtaaaagagt 35977162  T
Q  140 tttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattac 198  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||    
T  35977161 tttcactaagtggaaaaaattacaagacttctctctaaatacaaggagagaacaattac 35977103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 557 - 623
Target Start/End: Original strand, 5819102 - 5819168
Alignment:
Q  557 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctac 623  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| | |||||||    
T  5819102 atgtgttcacacatgttcacaatctcccacttaaagttacttttgtgagcattcaaagtttctctac 5819168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 4579241 - 4579126
Alignment:
Q  169 tctctctaaatacaaggagagtacaattaccgctctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatt 268  Q
    |||||||||||||||||||||   ||||||| ||||||| |  |||||||||||||| ||||        ||| |||||||||||||||||||||||  |    
T  4579241 tctctctaaatacaaggagagacaaattacc-ctctctcgtg-aaataggagaatactaact--------ctatgagaaacctcacaggagaaactatat 4579152  T
Q  269 tttctctctatattttttctctcact 294  Q
    || |||||||||||||| ||||||||    
T  4579151 ttcctctctatatttttcctctcact 4579126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 567 - 604
Target Start/End: Complemental strand, 42589389 - 42589352
Alignment:
Q  567 acatgttcacaatctcccacttaaagtcacttttgtga 604  Q
    |||| |||||||||||||||||||||||||||||||||    
T  42589389 acatcttcacaatctcccacttaaagtcacttttgtga 42589352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 343
Target Start/End: Original strand, 26976135 - 26976470
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976135 aggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 26976234  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctct 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  26976235 aggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaattaccactctct 26976334  T
Q  207 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 306  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  26976335 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 26976433  T
Q  307 ctttacttgttcttgtgttgttactgatttgggatga 343  Q
    |||||||||||||||||||||||||||||||||||||    
T  26976434 ctttacttgttcttgtgttgttactgatttgggatga 26976470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 1235014 - 1234680
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1235014 aggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 1234915  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||    
T  1234914 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctct 1234815  T
Q  207 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 306  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  1234814 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 1234716  T
Q  307 ctttacttgttcttgtgttgttactgatttgggatg 342  Q
    ||||||||||||||||||||||||||||||||||||    
T  1234715 ctttacttgttcttgtgttgttactgatttgggatg 1234680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 7 - 341
Target Start/End: Original strand, 27873994 - 27874327
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27873994 aggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 27874093  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctct 206  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27874094 aagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 27874193  T
Q  207 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||||    
T  27874194 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagctatttttcctctctatattttttctctcacta-tctaaacaag 27874292  T
Q  307 ctttacttgttcttgtgttgttactgatttgggat 341  Q
    |||||||||||||||||||||||||||||||||||    
T  27874293 ctttacttgttcttgtgttgttactgatttgggat 27874327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 411
Target Start/End: Original strand, 27878713 - 27879134
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878713 aggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 27878812  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27878813 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccactctct 27878912  T
Q  207 cttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta---- 300  Q
    |||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||        
T  27878913 cttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctctctattctactaa 27879012  T
Q  301 -aacaa---------gctttac-ttgttcttgtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagcca 389  Q
     |||||         |  |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || |||||    
T  27879013 gaacaagtagttgttgtgttactttgttctggtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagcca 27879112  T
Q  390 tgcctcaaccattttcatttat 411  Q
    |||| |||||| || |||||||    
T  27879113 tgccccaaccaattgcatttat 27879134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 7 - 294
Target Start/End: Complemental strand, 18968190 - 18967912
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  18968190 aggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaacaaata 18968091  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccgctctc 205  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||   ||||| | |||||    
T  18968090 aggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaagacaattacaagacttctctctaaatacaaggagagacaaattagc-ctctc 18967992  T
Q  206 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 294  Q
    || |  |||||||||||||| |||        |||||||||||||||||| |||||||||  ||| |||| ||||||||| ||||||||    
T  18967991 tcat-gaaataggagaatactaac--------actaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact 18967912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 30986819 - 30986552
Alignment:
Q  13 cagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa---cccctcaacaaataagg 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||   |||||||||||||||||    
T  30986819 cagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatattt-acgtggaaagtacccctcaacaaataagg 30986721  T
Q  110 ggaaaaaa--ccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctctc 207  Q
      ||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||    
T  30986720 aaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctctaaatgcaaggagagtacaattaccactctctc 30986621  T
Q  208 ttataaataggagaatacaaactaacacaaactaggagaaacctca-caggagaaactaatt-tttctctcta 278  Q
    || ||||||| |||||    ||| |||| | |||||||||||||||  ||||||||||| || ||||||||||    
T  30986620 ttgtaaatagaagaat----actgacactacctaggagaaacctcatgaggagaaactatttctttctctcta 30986552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 49 - 291
Target Start/End: Complemental strand, 30966923 - 30966683
Alignment:
Q  49 agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcacta 147  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  30966923 agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta 30966825  T
Q  148 agtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctctcttataaataggagaatacaaactaacacaaactaggagaa 247  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||||||||| ||||||||| ||||||| |||||    ||| |  | | |||||||||    
T  30966824 agtggaagaaattgcagaacctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat----actgaggctacctaggagaa 30966729  T
Q  248 acctcac-aggagaaactaatt-tttctctctatattttttctctc 291  Q
    ||||||| || |||||||| || |||||||||||||||||||||||    
T  30966728 acctcacaagtagaaactatttctttctctctatattttttctctc 30966683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 21966852 - 21966677
Alignment:
Q  16 agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa 115  Q
    |||||| ||| ||||||||||||||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| |||||| |||||||    
T  21966852 agtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataaagggaaaa 21966755  T
Q  116 aaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaa 194  Q
    | | | ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| | ||| ||||||||||    
T  21966754 atc-atggggcaagagtagagaactttcactaaatggaagaaattataagacctctctctaatttcaaagagagtacaa 21966677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 23012520 - 23012667
Alignment:
Q  22 aaaatattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca 120  Q
    |||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || |||||| | ||| ||||||||    
T  23012520 aaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaaggggaaaaacca 23012617  T
Q  121 cggggcaagagtagagaactttcactaagtggaagaaattacaggacctct 171  Q
      |||||||||||||||||||||||||||||  ||||||| || |||||||    
T  23012618 -tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctct 23012667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 560 - 627
Target Start/End: Original strand, 27874539 - 27874606
Alignment:
Q  560 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttg 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||    
T  27874539 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttg 27874606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 557 - 623
Target Start/End: Original strand, 26976720 - 26976786
Alignment:
Q  557 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctac 623  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||||||    
T  26976720 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtttctctac 26976786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 569 - 627
Target Start/End: Complemental strand, 30968629 - 30968571
Alignment:
Q  569 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttg 627  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  30968629 atgttcacaatctcccacttaaagtcacttttgtgagcactcaaaatctctctaccttg 30968571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 572 - 626
Target Start/End: Complemental strand, 18967543 - 18967489
Alignment:
Q  572 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctacctt 626  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  18967543 ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctctacctt 18967489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 30967721 - 30967674
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacga 54  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||    
T  30967721 aggtaccagagtaacaaaatattatcaagcagctaaaataagagacga 30967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 569 - 627
Target Start/End: Complemental strand, 21966604 - 21966546
Alignment:
Q  569 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttg 627  Q
    ||||||||||| ||||||||| || ||||||||| || || ||||||||||||||||||    
T  21966604 atgttcacaatatcccacttacagccacttttgtaagatttcaaaatctctctaccttg 21966546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 567 - 604
Target Start/End: Original strand, 1472341 - 1472378
Alignment:
Q  567 acatgttcacaatctcccacttaaagtcacttttgtga 604  Q
    |||| |||||||||||||||||||||||||||||||||    
T  1472341 acatcttcacaatctcccacttaaagtcacttttgtga 1472378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 7 - 342
Target Start/End: Original strand, 9439376 - 9439710
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439376 aggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 9439475  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||    
T  9439476 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctct 9439575  T
Q  207 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 306  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  9439576 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 9439674  T
Q  307 ctttacttgttcttgtgttgttactgatttgggatg 342  Q
    ||||||||||||||||||||||||||||||||||||    
T  9439675 ctttacttgttcttgtgttgttactgatttgggatg 9439710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 7 - 342
Target Start/End: Original strand, 9444096 - 9444430
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444096 aggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 9444195  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||    
T  9444196 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaactacaaggagagtacaaataccactctct 9444295  T
Q  207 cttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactctaaacaag 306  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||    
T  9444296 cttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaactatttttcctctctatattttttctctcacta-tctaaacaag 9444394  T
Q  307 ctttacttgttcttgtgttgttactgatttgggatg 342  Q
    ||||||||||||||||||||||||||||||||||||    
T  9444395 ctttacttgttcttgtgttgttactgatttgggatg 9444430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 560 - 627
Target Start/End: Original strand, 9439921 - 9439988
Alignment:
Q  560 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttg 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||    
T  9439921 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttg 9439988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
Q  20 acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca 76  Q
    ||||||||||||||| | |||||||||||||| |||||||||| || ||||||||||    
T  4799371 acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca 4799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 567 - 604
Target Start/End: Original strand, 24594367 - 24594404
Alignment:
Q  567 acatgttcacaatctcccacttaaagtcacttttgtga 604  Q
    |||| |||||||||||||||||||||||||||||||||    
T  24594367 acatcttcacaatctcccacttaaagtcacttttgtga 24594404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 12 - 294
Target Start/End: Original strand, 16183640 - 16183913
Alignment:
Q  12 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183640 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 16183739  T
Q  112 aaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccgctctctctta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||   ||||||| |||||||||     
T  16183740 aaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctctaaatacaaggagagacaaattacc-ctctctctt- 16183837  T
Q  211 taaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 294  Q
     |||||||||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  16183838 gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 16183913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 12 - 300
Target Start/End: Complemental strand, 30235330 - 30235038
Alignment:
Q  12 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 111  Q
    |||||||| ||||||||||| || |||||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  30235330 ccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacgaataagggg 30235232  T
Q  112 -aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctct-ctaaatacaaggagagtacaattaccgctctctctt 209  Q
     |||||||||||||  ||||||||| |||||||| ||| | |||||||||||||||||||||| |||  || |||||||||||||||||| |||||||||    
T  30235231 aaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctctctcctatttataaggagagtacaattaccactctctctt 30235132  T
Q  210 ataaataggagaatacaa--actaacacaaactaggagaaacctca-caggagaaactaatttttctctctatattttttctctcactactcta 300  Q
    ||||||||||||||||||  |||||||| |  || |||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||    
T  30235131 ataaataggagaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctctatatttttcctctcactactcta 30235038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 8139973 - 8140183
Alignment:
Q  12 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 111  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||    
T  8139973 ccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaatattt-atgtggaaacccctcaacaaataagggg 8140071  T
Q  112 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagagtacaattaccgctctctcttat 211  Q
    | ||||||| |||| |||| |||| |||||||||| |||||||||||||| | ||||||||||| |||||||||||||   ||||||| |||||||||      
T  8140072 agaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctcttaatacaaggagagacaaattacc-ctctctctt-g 8140169  T
Q  212 aaataggagaatac 225  Q
    ||||||||||||||    
T  8140170 aaataggagaatac 8140183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 8138470 - 8138645
Alignment:
Q  13 cagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggga 112  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||  |||| |||||||| || || | |||||||||||| |||||| |||||||    
T  8138470 cagagtatcaaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagtaatt-atgtggaaaccccttaacaaacaagggga 8138568  T
Q  113 aaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 189  Q
     ||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  8138569 gaaaaccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagag 8138645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 5102606 - 5102749
Alignment:
Q  16 agtaacaaaatattatcacgcagctaaaataagagacgagaaaa-gaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaa 114  Q
    ||||||||||||||||||| || ||||||||| ||| ||||||| |||| ||| || ||| ||||||| || || |||||| ||||||||||||||||||    
T  5102606 agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataatattt-acatgaaaaccc-tcaacaaataaggggaaa 5102703  T
Q  115 aaaccacggggcaagagtagagaactttcactaagtggaagaaatta 161  Q
    || ||| || ||||||||||| |||||| ||||||||| ||||||||    
T  5102704 aa-ccatggagcaagagtagataacttttactaagtgggagaaatta 5102749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 572 - 627
Target Start/End: Original strand, 2323956 - 2324011
Alignment:
Q  572 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttg 627  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2323956 ttcacaatctcccacttaaagccacttttgtgagcttccaaaatctctctaccttg 2324011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 36528425 - 36528529
Alignment:
Q  13 cagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggga 112  Q
    |||||||||||| ||  || ||||| ||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| || |||||||  |    
T  36528425 cagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacgaataaggaaa 36528523  T
Q  113 aaaaac 118  Q
    ||||||    
T  36528524 aaaaac 36528529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 604
Target Start/End: Original strand, 7504639 - 7504676
Alignment:
Q  567 acatgttcacaatctcccacttaaagtcacttttgtga 604  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  7504639 acatcttcacaatctcccacttaaagttacttttgtga 7504676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 168; Significance: 1e-89; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 7 - 294
Target Start/End: Original strand, 27230 - 27508
Alignment:
Q  7 aggtgccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaata 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  27230 aggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaacaaata 27329  T
Q  107 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccgctctc 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||||||||||||||||   |||||||  ||||    
T  27330 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaatacttctctctaaatacaaggagagacaaattacc-atctc 27428  T
Q  206 tcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 294  Q
    ||||  ||||||| |||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  27429 tctt-gaaataggtgaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 27508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 572 - 627
Target Start/End: Original strand, 27877 - 27932
Alignment:
Q  572 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttg 627  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||    
T  27877 ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctttaccttg 27932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 46191537 - 46191266
Alignment:
Q  12 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 111  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  46191537 ccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacaca--atattttacgtggaaacccctcaacaaataagggg 46191440  T
Q  112 aaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagagtacaattaccgctctctctta 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||   ||||||| |||||||||     
T  46191439 aaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaatagaaggagagacaaattacc-ctctctctt- 46191342  T
Q  211 taaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 294  Q
     |||||||||||||| |||        ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  46191341 gaaataggagaatactaac--------actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 46191266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 30697126 - 30697300
Alignment:
Q  14 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa 113  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||    
T  30697126 agagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatattt-acgtggaaacccctcaacaaataaggggaa 30697224  T
Q  114 aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctctaaatacaaggagag 189  Q
    ||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  30697225 aaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctctttctaaatacaaggagag 30697300  T

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Target: chr1; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 4130389 - 4130215
Alignment:
Q  15 gagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaa 114  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||    
T  4130389 gagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaattt-acgtggaaatccctcaacaaataaagggaaa 4130291  T
Q  115 aaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctctctctaaatacaaggagag 189  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||    
T  4130290 aaaccacggggcaagagtagagaactttcactaagtggaagataattacaagacttctctctaaatacaaggagag 4130215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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