View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5776-Insertion-5 (Length: 591)
Name: NF5776-Insertion-5
Description: NF5776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5776-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 7 - 385
Target Start/End: Complemental strand, 25467334 - 25466956
Alignment:
| Q |
7 |
aaaacttgcgttgttttaggcggaagaggattcatcggaaaatcattagtcttacagctcttgaaactcggtaactggatcgtccgaatcgccgattcca |
106 |
Q |
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| T |
25467334 |
aaaacttgcgttgttttaggcggaagaggattcatcgggaaatcattagtcttacagctcttgaaactcggaaactggatcgtccgaatcgccgattcca |
25467235 |
T |
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| Q |
107 |
ctcactctctcaaccttcaccactccgaatctctcctcgctgaagctctctcttcttcccgcgcttcttacttccatctcgacctcaccgataaacaccg |
206 |
Q |
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| T |
25467234 |
ctcactctctcaaccttcaccactccgaatctctcctcgctgaagctctctcttcttcccgcgcttcttacttccatctcgacctcaccgataaacaccg |
25467135 |
T |
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| Q |
207 |
catcgccaaaggtaacctttcaatcgacgcgatcttctttcgatcttctttcaattttctaacaatgtcgttttgtgcagttctagaaggttcttccgtc |
306 |
Q |
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| T |
25467134 |
catcgccaaaggtaaccgttcaatcgacgcgatcttctttcgatcttctttcaattttctaacaatgtctttttgtgcagttctagaaggttcttccgtc |
25467035 |
T |
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| Q |
307 |
gttttctattttgatgttgatagttccaataatggcgacgatttctgcagtttgtataagctaatagttcaaggtactc |
385 |
Q |
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| T |
25467034 |
gttttctattttgatgttgatagttccaataatggcgaccatttctgcagtttgtataagctaatagttcaaggtactc |
25466956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 454 - 591
Target Start/End: Complemental strand, 25466887 - 25466750
Alignment:
| Q |
454 |
ggtgcgaagaatgtgattattgcttgcagagaatctaaagtgaaacgcttaatatacaatagttctgctgatgttgtgtttgatagagataaaccgttgg |
553 |
Q |
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| T |
25466887 |
ggtgcgaagaatgtgattattgcttgcagagaatctaaagtgaaacgcttaatatacaatagttctgctgatgttgtgtttgatagagataaaccgttgg |
25466788 |
T |
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| Q |
554 |
cgtatccgtggaaagtgagattttctttaagtttgttt |
591 |
Q |
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| T |
25466787 |
cgtatccgtggaaagtgagattttctttaagtttgttt |
25466750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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