View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5776-Insertion-6 (Length: 380)

Name: NF5776-Insertion-6
Description: NF5776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5776-Insertion-6
NF5776-Insertion-6
[»] chr7 (5 HSPs)
chr7 (8-212)||(45432246-45432450)
chr7 (248-332)||(43448458-43448543)
chr7 (245-298)||(29065401-29065454)
chr7 (150-222)||(19068459-19068530)
chr7 (166-222)||(32948892-32948948)
[»] chr8 (3 HSPs)
chr8 (8-222)||(42293548-42293762)
chr8 (229-319)||(32318049-32318140)
chr8 (251-318)||(36228533-36228601)
[»] chr2 (4 HSPs)
chr2 (8-212)||(34237981-34238193)
chr2 (223-380)||(25617692-25617848)
chr2 (223-380)||(29647318-29647474)
chr2 (251-326)||(38798454-38798530)
[»] chr5 (8 HSPs)
chr5 (8-215)||(43512152-43512367)
chr5 (8-222)||(10470696-10470900)
chr5 (248-319)||(22798517-22798588)
chr5 (112-210)||(11448526-11448623)
chr5 (155-222)||(14099233-14099300)
chr5 (171-222)||(33574030-33574080)
chr5 (112-186)||(11447865-11447939)
chr5 (166-222)||(19118732-19118788)
[»] chr4 (5 HSPs)
chr4 (8-202)||(20423536-20423738)
chr4 (228-332)||(1865502-1865606)
chr4 (245-298)||(49574094-49574147)
chr4 (166-222)||(52305745-52305801)
chr4 (150-214)||(19638845-19638909)
[»] chr1 (8 HSPs)
chr1 (228-332)||(23817603-23817707)
chr1 (228-332)||(10919398-10919502)
chr1 (224-314)||(13649503-13649594)
chr1 (166-222)||(2071471-2071526)
chr1 (224-314)||(19138841-19138932)
chr1 (168-222)||(19790834-19790887)
chr1 (112-210)||(44770327-44770424)
chr1 (166-222)||(9150921-9150977)
[»] chr6 (3 HSPs)
chr6 (228-332)||(33904101-33904205)
chr6 (248-332)||(18094405-18094490)
chr6 (150-216)||(20509358-20509424)
[»] chr3 (7 HSPs)
chr3 (248-332)||(55058539-55058624)
chr3 (149-222)||(48058269-48058341)
chr3 (112-186)||(24515198-24515272)
chr3 (112-210)||(24515871-24515968)
chr3 (254-331)||(36497004-36497081)
chr3 (253-285)||(5492250-5492282)
chr3 (166-222)||(48058958-48059013)
[»] scaffold0025 (1 HSPs)
scaffold0025 (260-332)||(150942-151014)
[»] scaffold0006 (1 HSPs)
scaffold0006 (224-314)||(139283-139374)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 45432450 - 45432246
Alignment:
Q  8 tttttcctcttcatcactaatgttgggttttgctggaagaaaaagcgttggacttaaaacaacttgaaaaagcctcgaaacaaacatctatgagatacat 107  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45432450 tttttcctcttcatcaccaatgttgggttttgctggaagaagaagcgttggacttgaaacaacttgaaaaagcctcgaaacaaacatctatgagatacat 45432351  T
Q  108 gtgttgttttagtgaccattataatctcaaccgttcatctcaatctaatggttaataattaaccctctcaccctctcatattaaatagtcctctcacttg 207  Q
    |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45432350 gtgttgttttagtgaccaatataatctcaaccgtttatcccaatctaatggttaataattaaccctctcaccctctcatattaaatagtcttctcacttg 45432251  T
Q  208 atatg 212  Q
    |||||    
T  45432250 atatg 45432246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 332
Target Start/End: Complemental strand, 43448543 - 43448458
Alignment:
Q  248 tttaaatgagagg-tgagagggataaatcacaacccttgaatcaatctttattgtgctacttaattttaaaaattgcagcatataa 332  Q
    ||||||||||||| |||||||  |||||||||||||||||||| |||||||||||| | ||| ||||| ||||||||||| |||||    
T  43448543 tttaaatgagagggtgagaggattaaatcacaacccttgaatccatctttattgtgttgcttcatttttaaaattgcagcctataa 43448458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 29065454 - 29065401
Alignment:
Q  245 ttctttaaatgagaggtgagagggataaatcacaacccttgaatcaatctttat 298  Q
    ||||| |||||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  29065454 ttcttaaaatgagaagtgagagggttaaatcacaacccttggatcaatcattat 29065401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 19068530 - 19068459
Alignment:
Q  150 atctaatggttaataattaaccctctcaccctctcatattaaatagtcctctcacttgatatgtcctgtatat 222  Q
    |||||||||||| |||| || |||||||||||||||| ||||| |||||||||| |||| ||| ||| |||||    
T  19068530 atctaatggttactaatcaatcctctcaccctctcat-ttaaaaagtcctctcatttgaaatgccctctatat 19068459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 32948948 - 32948892
Alignment:
Q  166 ttaaccctctcaccctctcatattaaatagtcctctcacttgatatgtcctgtatat 222  Q
    |||||||||||| ||||||||  |||| ||| |||||| |||||||||||| |||||    
T  32948948 ttaaccctctcatcctctcatgataaagagtgctctcatttgatatgtcctatatat 32948892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 42293762 - 42293548
Alignment:
Q  8 tttttcctcttcatcactaatgttgggttttgctggaagaaaaagcgttggacttaaaacaacttgaaaaagcctcgaaacaaacatctatgagatacat 107  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||    
T  42293762 tttttcctcttcatcaccaatgttgggttttgctggaagaagaagcgctggacctgaaacaacttgaaaaaacctcgaaacaaacatctatgagatacat 42293663  T
Q  108 gtgttgttttagtgaccattataatctcaaccgttcatctcaatctaatggttaataattaaccctctcaccctctcatattaaatagtcctctcacttg 207  Q
    |||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  42293662 gtgttgttttagtgaccaatataatctcaaccatttatctcaatctaatggttaataattaaccctctcaccctctcatattaaatagtcatctcacctg 42293563  T
Q  208 atatgtcctgtatat 222  Q
    ||||||||| |||||    
T  42293562 atatgtcctctatat 42293548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 229 - 319
Target Start/End: Original strand, 32318049 - 32318140
Alignment:
Q  229 gtatcaaataaaagcattctttaaa-tgagaggtgagagggataaatcacaacccttgaatcaatctttattgtgctacttaattttaaaaa 319  Q
    ||||||||||| |||| | |||||| |||||| |||||||| ||||| |||||||||| |||||||| ||||||| ||||||||||| ||||    
T  32318049 gtatcaaataagagcactatttaaaatgagagatgagagggttaaattacaacccttggatcaatctatattgtgttacttaatttttaaaa 32318140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 36228533 - 36228601
Alignment:
Q  251 aaatgagaggtgagagggataaatcacaacccttgaatcaatctttattgtgctactt-aattttaaaa 318  Q
    ||||||||| ||||||||  ||||||||||||||  |||||||||||||||| ||||| ||||||||||    
T  36228533 aaatgagagatgagagggtgaaatcacaacccttagatcaatctttattgtgttacttaaattttaaaa 36228601  T

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Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 34238193 - 34237981
Alignment:
Q  8 tttttcctcttcatcactaatgttgggttttgctggaagaaaaagcgttggacttaaaacaa--------cttgaaaaagcctcgaaacaaacatctatg 99  Q
    |||||||||||||||||  |||||||||||||||||||||| ||| ||||||||| ||||||        |||||||||||| |||||||||||||||||    
T  34238193 tttttcctcttcatcaccgatgttgggttttgctggaagaagaagagttggacttgaaacaatcgttggacttgaaaaagccccgaaacaaacatctatg 34238094  T
Q  100 agatacatgtgttgttttagtgaccattataatctcaaccgttcatctcaatctaatggttaataattaaccctctcaccctctcatattaaatagtcct 199  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34238093 agatacatgtgttgttttagtgaccaatataatctcaaccgtttatctcaatctaatggttaataattaaccctctcaccctctcatattaaatagtcct 34237994  T
Q  200 ctcacttgatatg 212  Q
    |||||||||||||    
T  34237993 ctcacttgatatg 34237981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 223 - 380
Target Start/End: Complemental strand, 25617848 - 25617692
Alignment:
Q  223 ggggatgtatcaaataaaagcattctttaaatgagaggtgagagggataaatcacaacccttgaatcaatctttattgtgctacttaattttaaaaattg 322  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25617848 ggggatgtatcaaatgagagcattctttaaatgagaggtgagagggataaatcacaacccttgaatcaatctttattgtgctacttaattttaaaaattg 25617749  T
Q  323 cagcatataannnnnnncattacccttttgcgtgcttcttctccagccgtttcatctc 380  Q
    |||| |||||       |||| ||||||||||||||||||||||||||||||||||||    
T  25617748 cagcgtataa-ttttttcattccccttttgcgtgcttcttctccagccgtttcatctc 25617692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 223 - 380
Target Start/End: Complemental strand, 29647474 - 29647318
Alignment:
Q  223 ggggatgtatcaaataaaagcattctttaaatgagaggtgagagggataaatcacaacccttgaatcaatctttattgtgctacttaattttaaaaattg 322  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29647474 ggggatgtatcaaatgagagcattctttaaatgagaggtgagagggataaatcacaacctttgaatcaatctttattgtgctacttaattttaaaaattg 29647375  T
Q  323 cagcatataannnnnnncattacccttttgcgtgcttcttctccagccgtttcatctc 380  Q
    |||| |||||        ||| ||||||||||||||| ||||||| ||||||||||||    
T  29647374 cagcgtataattttttt-attccccttttgcgtgcttattctccaaccgtttcatctc 29647318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 38798454 - 38798530
Alignment:
Q  251 aaatgagagg-tgagagggataaatcacaacccttgaatcaatctttattgtgctacttaattttaaaaattgcagc 326  Q
    |||||||||| || ||||| ||||||| | |||||| |||||||||||| ||| || |||||||| ||| |||||||    
T  38798454 aaatgagagggtgggagggttaaatcatatcccttggatcaatctttatggtggtatttaatttttaaagttgcagc 38798530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 43512152 - 43512367
Alignment:
Q  8 tttttcctcttcatcactaatgttgggttttgctggaagaaaaagcgttggacttaaaacaa--------cttgaaaaagcctcgaaacaaacatctatg 99  Q
    ||||||||||| |||||  |||||||||||||||||||||| ||||||||||||| ||||||        ||||||||||||||||||||||||||| ||    
T  43512152 tttttcctctttatcaccgatgttgggttttgctggaagaagaagcgttggacttgaaacaatcgttggacttgaaaaagcctcgaaacaaacatctgtg 43512251  T
Q  100 agatacatgtgttgttttagtgaccattataatctcaaccgttcatctcaatctaatggttaataattaaccctctcaccctctcatattaaatagtcct 199  Q
    | |||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  43512252 acatacatgtgttgttttagtgaccaatataatctgaaccgtttatctcaatctaatgattaataattaaccttctcaccctctcatattaaatagtcct 43512351  T
Q  200 ctcacttgatatgtcc 215  Q
    ||||||||||||||||    
T  43512352 ctcacttgatatgtcc 43512367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 10470696 - 10470900
Alignment:
Q  8 tttttcctcttcatcactaatgttgggttttgctggaagaaaaagcgttggacttaaaacaacttgaaaaagcctcgaaacaaacatctatgagatacat 107  Q
    |||||||||||||||||  |||||| ||||||||||||||| ||| |||||||||          |||||||||||||||||||||||||||||||| ||    
T  10470696 tttttcctcttcatcaccgatgttgagttttgctggaagaagaagtgttggactt----------gaaaaagcctcgaaacaaacatctatgagatatat 10470785  T
Q  108 gtgttgttttagtgaccattataatctcaaccgttcatctcaatctaatggttaataattaaccctctcaccctctcatattaaatagtcctctcacttg 207  Q
    || ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10470786 gtcttgttttagtgaccaatataatctcaaccgtttatctcaatctaatggttaataattaaccctctcaccctctcatattaaatagtcctctcacttg 10470885  T
Q  208 atatgtcctgtatat 222  Q
    ||||| ||| |||||    
T  10470886 atatgccctatatat 10470900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 319
Target Start/End: Original strand, 22798517 - 22798588
Alignment:
Q  248 tttaaatgagaggtgagagggataaatcacaacccttgaatcaatctttattgtgctacttaattttaaaaa 319  Q
    |||||||||||  ||||||||||||||| ||||||||  || |||||||||||| |||| ||||||||||||    
T  22798517 tttaaatgagaaatgagagggataaatctcaacccttagattaatctttattgttctacctaattttaaaaa 22798588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 11448526 - 11448623
Alignment:
Q  112 tgttttagtgaccattataatctcaaccgttcatctcaatctaatggttaataattaaccctctcaccctctcatattaaatagtcctctcacttgata 210  Q
    |||||||||||||| | |||||  |||||||||||| |||||| ||| ||  ||| || |||||||||||||||| ||||  |||||||||| ||||||    
T  11448526 tgttttagtgaccagtttaatcctaaccgttcatcttaatctagtggctagcaatcaatcctctcaccctctcat-ttaagaagtcctctcatttgata 11448623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 14099233 - 14099300
Alignment:
Q  155 atggttaataattaaccctctcaccctctcatattaaatagtcctctcacttgatatgtcctgtatat 222  Q
    ||||||| ||||||  |||||||| |||||| | |||||| |||||||||||||||||| || |||||    
T  14099233 atggttattaattattcctctcactctctcacaataaatactcctctcacttgatatgttctctatat 14099300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 33574030 - 33574080
Alignment:
Q  171 cctctcaccctctcatattaaatagtcctctcacttgatatgtcctgtatat 222  Q
    |||||||||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  33574030 cctctcaccctctcattttaaa-agtcctctcacttgatatgccctatatat 33574080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 11447939 - 11447865
Alignment:
Q  112 tgttttagtgaccattataatctcaaccgttcatctcaatctaatggttaataattaaccctctcaccctctcat 186  Q
    |||||| ||||||| | |||||  |||||||||||| |||||||||| ||  ||| || ||||||||||||||||    
T  11447939 tgttttggtgaccagtctaatcctaaccgttcatcttaatctaatggctagcaatcaatcctctcaccctctcat 11447865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 19118788 - 19118732
Alignment:
Q  166 ttaaccctctcaccctctcatattaaatagtcctctcacttgatatgtcctgtatat 222  Q
    |||||||||||| ||||||||  |||| ||| |||||| |||||||||||| |||||    
T  19118788 ttaaccctctcatcctctcatgataaagagtgctctcatttgatatgtcctatatat 19118732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 20423536 - 20423738
Alignment:
Q  8 tttttcctcttcatcactaatgttgggttttgctggaagaaaaagcgttggacttaaaacaa--------cttgaaaaagcctcgaaacaaacatctatg 99  Q
    |||||||||||||||||  |||||||||||||||||||||| ||||||||||||| ||||||        ||||||||| ||||||||||||||||||||    
T  20423536 tttttcctcttcatcaccgatgttgggttttgctggaagaagaagcgttggacttgaaacaatcgttggacttgaaaaaacctcgaaacaaacatctatg 20423635  T
Q  100 agatacatgtgttgttttagtgaccattataatctcaaccgttcatctcaatctaatggttaataattaaccctctcaccctctcatattaaatagtcct 199  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  20423636 agatacatgtgttgttttagtgaccaatataatctcaaccgtttatctcaatctaatggttaataattaaccccctcaccctctcatattaaataatcct 20423735  T
Q  200 ctc 202  Q
    |||    
T  20423736 ctc 20423738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 1865502 - 1865606
Alignment:
Q  228 tgtatcaaataaaagcattctttaaatgagaggtgagagggataaatcacaacccttgaatcaatctttattgtgctacttaattttaaaaattgcagca 327  Q
    |||||||||| | |||| | || ||||||||| ||||||||||| || |||||||||| || ||||||||||||||| |||||||||||||| ||||||     
T  1865502 tgtatcaaatgagagcactgttaaaatgagagatgagagggatacataacaacccttggattaatctttattgtgctccttaattttaaaaactgcagcg 1865601  T
Q  328 tataa 332  Q
    |||||    
T  1865602 tataa 1865606  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 49574094 - 49574147
Alignment:
Q  245 ttctttaaatgagaggtgagagggataaatcacaacccttgaatcaatctttat 298  Q
    ||||| |||||||||||||||||| |||||||||||||||  ||||||| ||||    
T  49574094 ttcttaaaatgagaggtgagagggttaaatcacaacccttagatcaatcattat 49574147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 52305745 - 52305801
Alignment:
Q  166 ttaaccctctcaccctctcatattaaatagtcctctcacttgatatgtcctgtatat 222  Q
    ||||||||||||||||||||| ||| | |||| ||||| |||||||||||| |||||    
T  52305745 ttaaccctctcaccctctcattttatagagtcatctcatttgatatgtcctatatat 52305801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 19638845 - 19638909
Alignment:
Q  150 atctaatggttaataattaaccctctcaccctctcatattaaatagtcctctcacttgatatgtc 214  Q
    |||| ||||||| ||||||  |||||||| |||||| | |||||| |||| ||||||||||||||    
T  19638845 atctgatggttattaattattcctctcactctctcacaataaatactcctttcacttgatatgtc 19638909  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 23817603 - 23817707
Alignment:
Q  228 tgtatcaaataaaagcattctttaaatgagaggtgagagggataaatcacaacccttgaatcaatctttattgtgctacttaattttaaaaattgcagca 327  Q
    |||||||||| | |||| | || ||||||||| ||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||||| ||||||     
T  23817603 tgtatcaaatgagagcactattaaaatgagagatgagagggatacataacaacccttgaattaatctttattgtgctccttaattttaaaaactgcagcg 23817702  T
Q  328 tataa 332  Q
    |||||    
T  23817703 tataa 23817707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 10919398 - 10919502
Alignment:
Q  228 tgtatcaaataaaagcattctttaaatgagaggtgagagggataaatcacaacccttgaatcaatctttattgtgctacttaattttaaaaattgcagca 327  Q
    |||||||||| | |||| | || ||||||||| ||||||||||| || |||||||||| || ||||||||||||||| |||||||||||||| ||||||     
T  10919398 tgtatcaaatgagagcactattaaaatgagagatgagagggatacataacaacccttggattaatctttattgtgctccttaattttaaaaactgcagcg 10919497  T
Q  328 tataa 332  Q
    |||||    
T  10919498 tataa 10919502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 314
Target Start/End: Complemental strand, 13649594 - 13649503
Alignment:
Q  224 gggatgtatcaaataaaagcattctttaaat-gagaggtgagagggataaatcacaacccttgaatcaatctttattgtgctacttaatttt 314  Q
    |||||||||||||| | |||| | |||| || ||||| ||| |||| |||||||||||||||| ||| ||||| |||||| |||||||||||    
T  13649594 gggatgtatcaaatgagagcaatatttacattgagagatgatagggttaaatcacaacccttggatccatcttaattgtgttacttaatttt 13649503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 2071471 - 2071526
Alignment:
Q  166 ttaaccctctcaccctctcatattaaatagtcctctcacttgatatgtcctgtatat 222  Q
    |||| |||||||||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  2071471 ttaatcctctcaccctctcattttaaa-agtcctctcacttgatatgccctatatat 2071526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 19138841 - 19138932
Alignment:
Q  224 gggatgtatcaaataaaagcattctttaaat-gagaggtgagagggataaatcacaacccttgaatcaatctttattgtgctacttaatttt 314  Q
    |||||||||||||| | |||| | |||| || ||||| |||||||| |||||||||||||||| ||| ||||| |||| | ||||| |||||    
T  19138841 gggatgtatcaaatgagagcaatatttacattgagagatgagagggttaaatcacaacccttggatccatcttaattgagttacttcatttt 19138932  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 19790887 - 19790834
Alignment:
Q  168 aaccctctcaccctctcatattaaatagtcctctcacttgatatgtcctgtatat 222  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||| ||| |||||    
T  19790887 aaccctctcaccctctcattttaaa-actcctctcacttgatatgccctatatat 19790834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 44770327 - 44770424
Alignment:
Q  112 tgttttagtgaccattataatctcaaccgttcatctcaatctaatggttaataattaaccctctcaccctctcatattaaatagtcctctcacttgata 210  Q
    |||||| ||||||| | |||||  |||||||||||| |||||| ||| ||  ||| || |||||||||||||||| ||| | |||||||||| ||||||    
T  44770327 tgttttggtgaccagtttaatcctaaccgttcatcttaatctagtggctagcaatcaatcctctcaccctctcat-ttagaaagtcctctcatttgata 44770424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 9150977 - 9150921
Alignment:
Q  166 ttaaccctctcaccctctcatattaaatagtcctctcacttgatatgtcctgtatat 222  Q
    |||||||||||| ||||||||| |||| |||  ||||| |||||||||||| |||||    
T  9150977 ttaaccctctcatcctctcataataaagagtgttctcatttgatatgtcctctatat 9150921  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 33904101 - 33904205
Alignment:
Q  228 tgtatcaaataaaagcattctttaaatgagaggtgagagggataaatcacaacccttgaatcaatctttattgtgctacttaattttaaaaattgcagca 327  Q
    |||||||||||| |||| | || |||||||||  |||||||||| || ||||| |||| || ||||||||||||||| |||||||||||||| ||||||     
T  33904101 tgtatcaaataagagcactattaaaatgagagaagagagggatacataacaactcttggattaatctttattgtgctccttaattttaaaaactgcagcg 33904200  T
Q  328 tataa 332  Q
    |||||    
T  33904201 tataa 33904205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 332
Target Start/End: Complemental strand, 18094490 - 18094405
Alignment:
Q  248 tttaaatgagagg-tgagagggataaatcacaacccttgaatcaatctttattgtgctacttaattttaaaaattgcagcatataa 332  Q
    ||||||||||||| | |||||  ||||||||||||||| |||| |||||||||||| ||||| ||||| |||| |||||| |||||    
T  18094490 tttaaatgagagggtaagaggattaaatcacaacccttaaatccatctttattgtgttacttcatttttaaaactgcagcctataa 18094405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 20509358 - 20509424
Alignment:
Q  150 atctaatggttaataattaaccctctcaccctctcatattaaatagtcctctcacttgatatgtcct 216  Q
    |||| ||||||| ||||||  |||||| | |||||||| |||||| |||||||| ||||||||||||    
T  20509358 atctgatggttattaattattcctctcgcactctcataataaatactcctctcatttgatatgtcct 20509424  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 332
Target Start/End: Original strand, 55058539 - 55058624
Alignment:
Q  248 tttaaatgagagg-tgagagggataaatcacaacccttgaatcaatctttattgtgctacttaattttaaaaattgcagcatataa 332  Q
    ||||||||||||| |||||||  ||||||||||||||||||||  ||||||||||| | ||| ||||| |||| |||||| |||||    
T  55058539 tttaaatgagagggtgagaggattaaatcacaacccttgaatccgtctttattgtgttgcttcatttttaaaactgcagcctataa 55058624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 48058341 - 48058269
Alignment:
Q  149 aatctaatggttaataattaaccctctcaccctctcatattaaatagtcctctcacttgatatgtcctgtatat 222  Q
    ||||||||||  || | |||| |||||||||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  48058341 aatctaatggacaagatttaatcctctcaccctctcattttaaa-agtcctctcacttgatatgccctatatat 48058269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 24515272 - 24515198
Alignment:
Q  112 tgttttagtgaccattataatctcaaccgttcatctcaatctaatggttaataattaaccctctcaccctctcat 186  Q
    |||||||||||||| | |||||  |||||||||||| |||||| ||| ||  ||| || ||||||||||||||||    
T  24515272 tgttttagtgaccagtttaatcctaaccgttcatcttaatctagtggctagcaatcaatcctctcaccctctcat 24515198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 24515871 - 24515968
Alignment:
Q  112 tgttttagtgaccattataatctcaaccgttcatctcaatctaatggttaataattaaccctctcaccctctcatattaaatagtcctctcacttgata 210  Q
    |||||| ||||||| | |||||  |||||||||||| |||||| ||| ||  ||| || |||||||||||||||| ||||  |||||||||| ||||||    
T  24515871 tgttttggtgaccagtttaatcctaaccgttcatcttaatctagtggctagcaatcaatcctctcaccctctcat-ttaagaagtcctctcatttgata 24515968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 331
Target Start/End: Original strand, 36497004 - 36497081
Alignment:
Q  254 tgagaggtgagagggataaatcacaacccttgaatcaatctttattgtgctacttaattttaaaaattgcagcatata 331  Q
    |||||| |||||||| |||||||||||||||  |||| | |||| |||| || |||||| | |||| |||||||||||    
T  36497004 tgagagatgagagggttaaatcacaacccttagatcagtatttactgtgttatttaattattaaaactgcagcatata 36497081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 5492282 - 5492250
Alignment:
Q  253 atgagaggtgagagggataaatcacaacccttg 285  Q
    |||||||||||||||| ||||||||||||||||    
T  5492282 atgagaggtgagagggttaaatcacaacccttg 5492250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 48058958 - 48059013
Alignment:
Q  166 ttaaccctctcaccctctcatattaaatagtcctctcacttgatatgtcctgtatat 222  Q
    |||| |||||||||||||||| ||||| | |||||| |||||||||||||| |||||    
T  48058958 ttaatcctctcaccctctcattttaaa-attcctcttacttgatatgtcctatatat 48059013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 151014 - 150942
Alignment:
Q  260 gtgagagggataaatcacaacccttgaatcaatctttattgtgctacttaattttaaaaattgcagcatataa 332  Q
    ||||||||| ||||| |||||||||| |||||||  ||||||| ||| | ||||| |||| ||||||||||||    
T  151014 gtgagagggttaaattacaacccttggatcaatcactattgtgttacatcatttttaaaactgcagcatataa 150942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 314
Target Start/End: Complemental strand, 139374 - 139283
Alignment:
Q  224 gggatgtatcaaataaaagcattctttaaat-gagaggtgagagggataaatcacaacccttgaatcaatctttattgtgctacttaatttt 314  Q
    |||||||||||||| | |||| | |||| || ||||| |||||||| |||||||||||||||| ||| ||||| |||| | ||||| |||||    
T  139374 gggatgtatcaaatgagagcaatatttacattgagagatgagagggttaaatcacaacccttggatccatcttaattgagttacttcatttt 139283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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