View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5776-Insertion-7 (Length: 220)

Name: NF5776-Insertion-7
Description: NF5776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5776-Insertion-7
NF5776-Insertion-7
[»] chr8 (9 HSPs)
chr8 (8-220)||(548718-548930)
chr8 (50-220)||(23423716-23423886)
chr8 (50-220)||(894470-894640)
chr8 (50-194)||(906003-906147)
chr8 (108-194)||(1963481-1963567)
chr8 (121-171)||(566327-566377)
chr8 (114-194)||(2014862-2014942)
chr8 (114-194)||(2018245-2018325)
chr8 (114-194)||(2436899-2436979)
[»] scaffold0428 (1 HSPs)
scaffold0428 (117-194)||(1348-1425)
[»] chr6 (4 HSPs)
chr6 (113-194)||(845020-845101)
chr6 (113-194)||(870304-870385)
chr6 (117-194)||(33257230-33257307)
chr6 (51-194)||(8294448-8294591)
[»] scaffold0184 (1 HSPs)
scaffold0184 (117-193)||(15200-15276)
[»] scaffold0078 (1 HSPs)
scaffold0078 (117-193)||(57568-57644)
[»] chr7 (1 HSPs)
chr7 (154-194)||(41511443-41511483)
[»] chr1 (1 HSPs)
chr1 (114-194)||(5906147-5906227)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 548930 - 548718
Alignment:
Q  8 agtggatcttcaaaaaagggtaattttaattatactcttgatgatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548930 agtggatcttcaaaaaagggtaattttaattatactcttgatgatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggct 548831  T
Q  108 tggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggttt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  548830 tggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggttt 548731  T
Q  208 agtttatggtgtg 220  Q
    |||||||||||||    
T  548730 agtttatggtgtg 548718  T

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Target: chr8; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 23423716 - 23423886
Alignment:
Q  50 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423716 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 23423815  T
Q  150 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtg 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23423816 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtg 23423886  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 220
Target Start/End: Complemental strand, 894640 - 894470
Alignment:
Q  50 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 149  Q
    |||||||||||| |||||||||||   |||||  ||||||| || |||||  | || ||||| |||||||||||||| ||||||||||| |||||| |||    
T  894640 gatgatccattagattatttaccaagtggttttctggaaagaaccaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtc 894541  T
Q  150 atagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtg 220  Q
    || | |||| |||||||||||||| ||||||||||||| |||||| ||| ||| || | ||| ||||||||    
T  894540 atggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtg 894470  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 906003 - 906147
Alignment:
Q  50 gatgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtc 149  Q
    |||||||||||| | |||||||||   |||||||||||||| |  |||||  | || ||||| |||||||||||||| ||||||||||| |||||| |||    
T  906003 gatgatccattagagtatttaccaaatggtttcttggaaagaaacaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtc 906102  T
Q  150 atagttcaactggtggttttttgactcattgtggttggagttcaa 194  Q
    || | |||| |||||| ||||||| ||||||||||||| ||||||    
T  906103 atggatcaattggtgggtttttgagtcattgtggttggggttcaa 906147  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 1963481 - 1963567
Alignment:
Q  108 tggtggttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 194  Q
    |||| |||||||||||||| |||||  || |||| |||||||| ||||| | |||||| |||||| ||||||||||||||| |||||    
T  1963481 tggttgttccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaa 1963567  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 566377 - 566327
Alignment:
Q  121 atgggctccacaagttgaaattcttagtcatagttcaactggtggtttttt 171  Q
    |||||| |||||||||||||||||| |||||||||||| || ||| |||||    
T  566377 atgggcaccacaagttgaaattcttggtcatagttcaattgatggattttt 566327  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 2014942 - 2014862
Alignment:
Q  114 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 194  Q
    ||||||||||||| |||||  || |||| ||| |||| ||||||  |||||| || |||||||| |||||||||| |||||    
T  2014942 ttccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaa 2014862  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 2018325 - 2018245
Alignment:
Q  114 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 194  Q
    ||||||||||||| |||||  || |||| ||| |||| ||||||  |||||| || |||||||| |||||||||| |||||    
T  2018325 ttccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaa 2018245  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 2436899 - 2436979
Alignment:
Q  114 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 194  Q
    ||||||||||||| ||||| ||| |||| |||||||| || |||  ||||||||| |||| ||| ||||| |||| |||||    
T  2436899 ttccatcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaa 2436979  T

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Target: scaffold0428 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 1348 - 1425
Alignment:
Q  117 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 194  Q
    |||||||||| ||||||||||| |||||| ||||| | |||| |||||||||||| | ||||||||||||||||||||    
T  1348 catcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaa 1425  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 845101 - 845020
Alignment:
Q  113 gttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 194  Q
    |||||||  ||||| |||||| ||||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  845101 gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaa 845020  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 870385 - 870304
Alignment:
Q  113 gttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 194  Q
    |||||||  ||||| |||||| ||||||||||| |||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  870385 gttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaa 870304  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 33257230 - 33257307
Alignment:
Q  117 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 194  Q
    |||||||||| ||||||||||| |||||| ||||| | |||| |||||||||||| | ||||||||||||||||||||    
T  33257230 catcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaa 33257307  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 194
Target Start/End: Complemental strand, 8294591 - 8294448
Alignment:
Q  51 atgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtca 150  Q
    ||||||||||| | |||||||||   ||||| |||||||| || |||||  | ||  | || ||| |||||||||| ||||||||||| |||||| ||||    
T  8294591 atgatccattagagtatttaccaaatggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtca 8294492  T
Q  151 tagttcaactggtggttttttgactcattgtggttggagttcaa 194  Q
    | | |||| |||||| ||||| | ||||||||||||||||||||    
T  8294491 tggatcaattggtgggtttttaagtcattgtggttggagttcaa 8294448  T

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Target: scaffold0184 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 15276 - 15200
Alignment:
Q  117 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttca 193  Q
    |||||||||| || ||||||||||| ||||  |||||||||  |||||| ||||| | |||||||||||||| ||||    
T  15276 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 15200  T

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Target: scaffold0078 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 57568 - 57644
Alignment:
Q  117 catcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttca 193  Q
    |||||||||| || ||||||||||| ||||  |||||||||  |||||| ||||| | |||||||||||||| ||||    
T  57568 catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattca 57644  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 41511443 - 41511483
Alignment:
Q  154 ttcaactggtggttttttgactcattgtggttggagttcaa 194  Q
    ||||| |||||| |||||||||||||||||||||| |||||    
T  41511443 ttcaattggtggatttttgactcattgtggttggaattcaa 41511483  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 5906147 - 5906227
Alignment:
Q  114 ttccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaa 194  Q
    ||||||||||||| || ||  ||||||| |||||||| |  |||  |||||| || |||| ||||||||||||||||||||    
T  5906147 ttccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaa 5906227  T

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