View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5776-Insertion-8 (Length: 123)
Name: NF5776-Insertion-8
Description: NF5776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5776-Insertion-8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 1e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 5899826 - 5899711
Alignment:
| Q |
8 |
ttgtacttgtctcctagcttgtgcatctgatatgtatatgcgttaatctttcatgaaatcgttgattttaatatttgttctgtccccactctcaggtcaa |
107 |
Q |
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| T |
5899826 |
ttgtacttgtctcctagcttgtgcatctgatatgtatatgcgttaatctttcatgaaattgttgattttaatatttgttctgtcctcactctcaggtcaa |
5899727 |
T |
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| Q |
108 |
gacacactgccaaaat |
123 |
Q |
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| T |
5899726 |
gacacactgccaaaat |
5899711 |
T |
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Target: chr4; HSP #2
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 5860850 - 5860735
Alignment:
| Q |
8 |
ttgtacttgtctcctagcttgtgcatctgatatgtatatgcgttaatctttcatgaaatcgttgattttaatatttgttctgtccccactctcaggtcaa |
107 |
Q |
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||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
5860850 |
ttgtatttgtctcctagcttgtgtatccgatatgtatatgcgttaatctttcatgaaatcgttgattttaatatttgttctgtcctcaatctcaggtcaa |
5860751 |
T |
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| Q |
108 |
gacacactgccaaaat |
123 |
Q |
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|||||||||||||||| |
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| T |
5860750 |
gacacactgccaaaat |
5860735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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