View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5776_high_1 (Length: 551)
Name: NF5776_high_1
Description: NF5776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5776_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Complemental strand, 39666646 - 39666107
Alignment:
| Q |
1 |
ttgttgagtaaagggtacaagtcaccgcttaatatcgatgacgttccatccctttctccacagcatagagctgagagaatgtctgttatctttgaatcaa |
100 |
Q |
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| T |
39666646 |
ttgttgagtaaagggtacaagtcaccgcttaatatcgatgacgttccatccctttctccacagcatagagctgagagaatgtctgttatctttgaatcaa |
39666547 |
T |
|
| Q |
101 |
aatggcctaaatcggatgagaggtcgaagaatccagtaagagtcacgttgcttcggtgtttctggaaggatataatattcactgcttttcttgctgtcat |
200 |
Q |
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| T |
39666546 |
aatggcctaaatcggatgagaggtcgaagaatccagtaagagtcacgttgcttcggtgtttctggaaggatataatgttcactgcttttcttgctgtcat |
39666447 |
T |
|
| Q |
201 |
taggctgtctgttatgtttgttggtcccgttttaattcataattttgttgatttcacttctggaaaaggtagttctgtgtatgaaggatactatctagtg |
300 |
Q |
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| T |
39666446 |
taggctgtctgttatgtttgttggacccgttttaattcaaaattttgttgatttcacttctggaaaaggtagttctgtgtatgaaggatactatctagtg |
39666347 |
T |
|
| Q |
301 |
ctgattcttgttgcagcaaaatttgttgaagttttgacaactcatcacttcaacttcaactctcagaaacttggaatgcttataagatgcactctcatta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39666346 |
ctgattcttgttgcagcaaaatttgttgaagttttgacaactcatcacttcaacttcaactctcagaaacttggaatgcttattagatgcactctcatta |
39666247 |
T |
|
| Q |
401 |
cttctttgtataaaaaggggttgaggctatcttgttctgcaagacaggatcatggtgttggtcctattgtgaattacatggctgttgatacacaacaatt |
500 |
Q |
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| T |
39666246 |
cttctttgtataaaaaggggttgaggctatcttgttctgcaagacaggatcatggtgttggtcctattgtgaattacatggctgttgatacacaacaatt |
39666147 |
T |
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| Q |
501 |
atctgacatgatgcttcagttacacgccgtttggatgatg |
540 |
Q |
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| T |
39666146 |
atctgacatgatgcttcagttacacgccgtttggatgatg |
39666107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 14321010 - 14320944
Alignment:
| Q |
191 |
ttgctgtcattaggctgtctgttatgtttgttggtcccgttttaattcataattttgttgatttcac |
257 |
Q |
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|||| ||||||||||| | |||||||| |||||||||| | || ||||| | ||||||||||||||| |
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| T |
14321010 |
ttgcagtcattaggctttgtgttatgtatgttggtcccttgttgattcaaagttttgttgatttcac |
14320944 |
T |
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