View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5776_high_4 (Length: 238)
Name: NF5776_high_4
Description: NF5776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5776_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 5900027 - 5899822
Alignment:
| Q |
15 |
cacagaccacatcaaatatgctctcagcgcctcagtctaacaacaccaattcagagaatggaagcttcgaaacacctgttttgagtgtatctgacagaaa |
114 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5900027 |
cacagaccacatcaaatatgctctcagcacctcagtctaacaacaccaattcagagaatggaagcttcgaaacacctgttttgagtgtatctgacagaaa |
5899928 |
T |
|
| Q |
115 |
gagaaaaaatactaaagcagtggagcatgtaccttcaattgcaaaaagacctcgtggtagatcatccactaccagcaagaaaattcctgtctcaggtata |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5899927 |
gagaaaaaatactaaagcagtggagcatgtaccttcaattgcaaaaagacctcgtggtagatcatccactaccagcaagaaaattcctgtctcaggtata |
5899828 |
T |
|
| Q |
215 |
gttgta |
220 |
Q |
| |
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|||||| |
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| T |
5899827 |
gttgta |
5899822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 5861045 - 5860845
Alignment:
| Q |
15 |
cacagaccacatcaaatatgctctcagcgcctcagtctaacaacaccaattcagagaatggaagcttcgaaacacctgttttgagtgtatctgacagaaa |
114 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
5861045 |
cacagaccacatcaaatatgctcttagcgcctcagtctaaca-------ttcagagaatagaagtttcgaaacacctgttttgagtgtatctgacagaaa |
5860953 |
T |
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| Q |
115 |
gagaaaaa-atactaaagcagtggagcatgtaccttcaattgcaaaaagacctcgtggtagatcatccactaccagcaagaaaattcctgtctcaggtat |
213 |
Q |
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||||||| |||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5860952 |
aagaaaaacatactagagcagtggagcatgcaccttcaattgaaaaaagacctcgtggtagatcatccactaccagcaggaaaattcctgtctcaggtat |
5860853 |
T |
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| Q |
214 |
agttgtat |
221 |
Q |
| |
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|||||||| |
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| T |
5860852 |
agttgtat |
5860845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 5861189 - 5861139
Alignment:
| Q |
15 |
cacagaccacatcaaatatgctctcagcgcctcagtctaacaacaccaatt |
65 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
5861189 |
cacagaccacatcaaatatgctctcagtgcctcagtctaacaacaacaatt |
5861139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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