View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5776_high_5 (Length: 237)

Name: NF5776_high_5
Description: NF5776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5776_high_5
NF5776_high_5
[»] chr2 (14 HSPs)
chr2 (1-222)||(11951119-11951340)
chr2 (3-59)||(31346838-31346894)
chr2 (3-61)||(31314976-31315034)
chr2 (3-59)||(31315043-31315099)
chr2 (6-61)||(2743520-2743575)
chr2 (3-61)||(31346955-31347013)
chr2 (3-61)||(31347022-31347080)
chr2 (3-61)||(2743322-2743380)
chr2 (3-61)||(2743388-2743446)
chr2 (3-61)||(2743454-2743512)
chr2 (20-61)||(31347089-31347130)
chr2 (25-61)||(31315203-31315239)
chr2 (25-59)||(31315135-31315169)
chr2 (28-61)||(31346902-31346935)
[»] chr1 (19 HSPs)
chr1 (4-61)||(22207756-22207813)
chr1 (2-61)||(51844341-51844400)
chr1 (4-61)||(14114761-14114818)
chr1 (3-60)||(22207686-22207743)
chr1 (4-60)||(22208026-22208082)
chr1 (4-61)||(14114692-14114749)
chr1 (1-66)||(15088626-15088691)
chr1 (4-61)||(22207892-22207949)
chr1 (1-66)||(22211234-22211299)
chr1 (3-59)||(22208092-22208148)
chr1 (4-59)||(14114832-14114887)
chr1 (9-60)||(22207828-22207879)
chr1 (2-61)||(51844408-51844467)
chr1 (4-59)||(14114903-14114958)
chr1 (9-59)||(22207964-22208014)
chr1 (9-61)||(15088567-15088619)
chr1 (9-61)||(22207625-22207677)
chr1 (9-61)||(22211175-22211227)
chr1 (2-60)||(51844475-51844533)
[»] chr4 (33 HSPs)
chr4 (1-59)||(6735388-6735446)
chr4 (4-59)||(4852562-4852617)
chr4 (8-59)||(5578260-5578311)
chr4 (3-61)||(31663382-31663440)
chr4 (5-59)||(31663585-31663639)
chr4 (9-61)||(5599782-5599834)
chr4 (5-61)||(13702608-13702664)
chr4 (5-61)||(13713101-13713157)
chr4 (5-61)||(14190480-14190536)
chr4 (4-59)||(4852631-4852686)
chr4 (6-61)||(5578454-5578509)
chr4 (6-61)||(5909056-5909111)
chr4 (3-61)||(13713299-13713357)
chr4 (5-61)||(1505972-1506028)
chr4 (3-59)||(5909119-5909175)
chr4 (3-59)||(14190544-14190600)
chr4 (9-61)||(31663314-31663366)
chr4 (4-59)||(13713234-13713289)
chr4 (3-61)||(1506103-1506161)
chr4 (3-61)||(1506170-1506228)
chr4 (3-61)||(5599908-5599966)
chr4 (3-61)||(5599974-5600032)
chr4 (9-59)||(13713172-13713222)
chr4 (3-59)||(1506037-1506093)
chr4 (3-59)||(1506236-1506292)
chr4 (25-61)||(5599864-5599900)
chr4 (25-61)||(31663449-31663485)
chr4 (3-49)||(6735330-6735376)
chr4 (3-61)||(31663516-31663574)
chr4 (18-59)||(4852715-4852756)
chr4 (8-61)||(13713371-13713424)
chr4 (6-58)||(5578327-5578379)
chr4 (9-61)||(31663245-31663297)
[»] chr6 (25 HSPs)
chr6 (5-61)||(26620452-26620508)
chr6 (5-61)||(26726431-26726487)
chr6 (2-60)||(26620386-26620444)
chr6 (2-60)||(26726365-26726423)
chr6 (3-61)||(28145140-28145198)
chr6 (3-59)||(6406589-6406645)
chr6 (2-61)||(28145206-28145265)
chr6 (6-61)||(29934621-29934676)
chr6 (1-61)||(28145272-28145332)
chr6 (9-61)||(34255662-34255714)
chr6 (20-59)||(33296087-33296126)
chr6 (8-58)||(5250016-5250066)
chr6 (3-61)||(26726298-26726356)
chr6 (3-61)||(34255464-34255522)
chr6 (3-61)||(34255530-34255588)
chr6 (2-59)||(5249948-5250005)
chr6 (4-61)||(28145074-28145131)
chr6 (3-59)||(31113158-31113214)
chr6 (3-59)||(34255598-34255654)
chr6 (9-58)||(5250085-5250134)
chr6 (25-58)||(29934558-29934591)
chr6 (5-58)||(31113227-31113280)
chr6 (2-53)||(6406519-6406570)
chr6 (30-61)||(26620321-26620352)
chr6 (30-61)||(26726234-26726265)
[»] chr3 (28 HSPs)
chr3 (5-61)||(5835615-5835671)
chr3 (1-61)||(19479990-19480050)
chr3 (2-61)||(5938781-5938840)
chr3 (3-61)||(5938916-5938974)
chr3 (3-61)||(18111435-18111493)
chr3 (4-59)||(28034722-28034777)
chr3 (5-59)||(5938717-5938771)
chr3 (3-61)||(5938849-5938907)
chr3 (3-61)||(18111569-18111627)
chr3 (4-61)||(19441048-19441105)
chr3 (2-59)||(19441113-19441170)
chr3 (2-58)||(19384083-19384139)
chr3 (9-61)||(28034793-28034845)
chr3 (6-61)||(14521109-14521164)
chr3 (3-58)||(45227234-45227289)
chr3 (3-61)||(5938983-5939041)
chr3 (3-61)||(18111502-18111560)
chr3 (8-60)||(29897056-29897108)
chr3 (7-59)||(29897110-29897162)
chr3 (3-58)||(14521046-14521101)
chr3 (8-59)||(28034659-28034710)
chr3 (3-61)||(2746786-2746844)
chr3 (3-61)||(19384198-19384256)
chr3 (2-51)||(19384326-19384375)
chr3 (25-61)||(19384282-19384318)
chr3 (27-59)||(45227300-45227332)
chr3 (33-67)||(19480118-19480152)
chr3 (20-61)||(19384149-19384190)
[»] scaffold0060 (2 HSPs)
scaffold0060 (5-60)||(40001-40056)
scaffold0060 (9-59)||(39935-39985)
[»] chr7 (32 HSPs)
chr7 (4-61)||(4341208-4341265)
chr7 (4-61)||(21958559-21958616)
chr7 (1-61)||(15695449-15695509)
chr7 (1-61)||(15702429-15702489)
chr7 (4-59)||(3078659-3078714)
chr7 (2-61)||(4341405-4341464)
chr7 (2-61)||(21958492-21958551)
chr7 (6-61)||(42785975-42786030)
chr7 (3-61)||(34456401-34456459)
chr7 (3-61)||(42785909-42785967)
chr7 (4-61)||(3081325-3081381)
chr7 (9-61)||(34456335-34456387)
chr7 (4-59)||(3081187-3081242)
chr7 (1-59)||(3078512-3078570)
chr7 (3-61)||(4341273-4341331)
chr7 (3-61)||(4341340-4341398)
chr7 (3-61)||(34456468-34456526)
chr7 (3-61)||(48477939-48477997)
chr7 (3-61)||(48478267-48478325)
chr7 (3-61)||(48478333-48478391)
chr7 (5-58)||(3081119-3081172)
chr7 (1-58)||(3081388-3081445)
chr7 (9-61)||(3078577-3078629)
chr7 (25-61)||(48478027-48478063)
chr7 (25-61)||(48478093-48478129)
chr7 (25-61)||(48478223-48478259)
chr7 (2-61)||(21958425-21958484)
chr7 (2-52)||(15695391-15695441)
chr7 (2-52)||(15702371-15702421)
chr7 (3-61)||(33615958-33616016)
chr7 (4-59)||(3081256-3081311)
chr7 (5-59)||(3078728-3078782)
[»] scaffold0043 (3 HSPs)
scaffold0043 (3-59)||(69771-69827)
scaffold0043 (3-59)||(69704-69760)
scaffold0043 (5-61)||(69836-69892)
[»] chr8 (21 HSPs)
chr8 (6-58)||(3166007-3166059)
chr8 (3-59)||(25336594-25336650)
chr8 (1-61)||(26082092-26082152)
chr8 (3-61)||(5558013-5558071)
chr8 (3-61)||(25336661-25336719)
chr8 (3-59)||(5557880-5557936)
chr8 (1-59)||(3165806-3165864)
chr8 (1-59)||(3165873-3165931)
chr8 (3-61)||(5557814-5557872)
chr8 (25-66)||(20810335-20810376)
chr8 (9-58)||(25336472-25336521)
chr8 (5-57)||(3166075-3166127)
chr8 (25-61)||(5557770-5557806)
chr8 (3-61)||(5557946-5558005)
chr8 (20-59)||(20810409-20810448)
chr8 (6-59)||(3165940-3165992)
chr8 (28-61)||(5557707-5557740)
chr8 (28-61)||(25336552-25336585)
chr8 (20-61)||(26082043-26082084)
chr8 (20-54)||(21542084-21542118)
chr8 (3-60)||(4844047-4844103)
[»] scaffold0046 (3 HSPs)
scaffold0046 (5-59)||(90474-90528)
scaffold0046 (2-59)||(90538-90595)
scaffold0046 (4-59)||(90609-90663)
[»] chr5 (6 HSPs)
chr5 (3-61)||(41528501-41528559)
chr5 (3-61)||(41528567-41528625)
chr5 (3-61)||(41528633-41528691)
chr5 (9-61)||(37368923-37368975)
chr5 (9-61)||(41528441-41528493)
chr5 (8-61)||(37368991-37369044)
[»] scaffold0927 (3 HSPs)
scaffold0927 (3-59)||(3621-3677)
scaffold0927 (3-52)||(3688-3737)
scaffold0927 (1-53)||(3552-3604)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 11951340 - 11951119
Alignment:
Q  1 tgcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacggctattacctattgaaatctcaatatcaattcaacgttca 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11951340 tgcatttgttactatgagtcgtatctcataggctacattatctcttcgttgtagcaaacggctattacctattgaaatctcaatatcaattcaacgttca 11951241  T
Q  101 taatctaagaatttcatatcgaataaaacatcagtcacaactacagtttaaaataaattatcaagtgtagaaggtcttagatttacctcaaagtctccaa 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11951240 taatctaagaatttcatatcgaataaaacatcagtcgcaactacagtttaaaataaattatcaagtgtagaaggtcttagatttacctcaaagtctccaa 11951141  T
Q  201 aaatcaagtttcaaagagaaga 222  Q
    ||||||||||||||||||||||    
T  11951140 aaatcaagtttcaaagagaaga 11951119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 31346894 - 31346838
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  31346894 catttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaac 31346838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 31314976 - 31315034
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  31314976 catttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 31315034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 31315043 - 31315099
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  31315043 cattttttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaac 31315099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 2743575 - 2743520
Alignment:
Q  6 ttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  2743575 ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 2743520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 31347013 - 31346955
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||| ||||||| ||||||| || ||||||||||||||||||||||||||||||||||    
T  31347013 cattttttactatgagtcgtaccttataggctacattatctcttcgttgtagcaaacgg 31346955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 31347080 - 31347022
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||| ||||||| || ||||||||||| ||||||||||||||||||||||||||||||    
T  31347080 cattttttactatgagccgtatctcatatgctacattatctcttcgttgtagcaaacgg 31347022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 2743380 - 2743322
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||| || |||  |||||||||||||||||||||||||||||||||||||    
T  2743380 cattcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 2743322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 2743446 - 2743388
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||| || |||  |||||||||||||||||||||||||||||||||||||    
T  2743446 cattcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 2743388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 2743512 - 2743454
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||| || |||  |||||||||||||||||||||||||||||||||||||    
T  2743512 cattcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 2743454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 31347130 - 31347089
Alignment:
Q  20 cgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  31347130 cgtacctcataggctacattatctcttcgttgtagcaaacgg 31347089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 31315203 - 31315239
Alignment:
Q  25 ctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  31315203 ctcataggctacattatctcttcgttgtagcaaacgg 31315239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 31315135 - 31315169
Alignment:
Q  25 ctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||||||||||||||||||||||||||||||    
T  31315135 ctcataggctacattatctcttcgttgtagcaaac 31315169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 31346935 - 31346902
Alignment:
Q  28 ataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||||||||||||||||| ||||||    
T  31346935 ataggctacattatctcttcgttgtagaaaacgg 31346902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 22207756 - 22207813
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22207756 atttgttactataagtcgtacctcataggctacattatctcttcgttgtagcaaacgg 22207813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 51844341 - 51844400
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||    
T  51844341 gcatttgttactatgagtcgtacctcataggctacattatctcttcgctgtagcaaacgg 51844400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 14114818 - 14114761
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||    
T  14114818 atttgttactatgagtcgtaccttataggctacattatctcttcgttgtagcaaacgg 14114761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 22207686 - 22207743
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacg 60  Q
    ||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  22207686 catttattactatgagccgtatctcataggctacattatctcttcgttgtagcaaacg 22207743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 22208026 - 22208082
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacg 60  Q
    |||||||||||| || |||| ||||||||||||||||||||||||||||||||||||    
T  22208026 atttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacg 22208082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 14114749 - 14114692
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||    
T  14114749 atttgttactatgagtcgtacctcataggttacattatctcttcattgtagcaaacgg 14114692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15088626 - 15088691
Alignment:
Q  1 tgcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacggctatt 66  Q
    ||||||||||||||| || |||| ||||||| ||||||||||||||| ||||||||||||| ||||    
T  15088626 tgcatttgttactatgagccgtacctcatagactacattatctcttcattgtagcaaacggatatt 15088691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 22207892 - 22207949
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||| || |||| |||||||| ||||||||||||||||||||||||||||    
T  22207892 atttgttactatgagccgtacctcataggttacattatctcttcgttgtagcaaacgg 22207949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 22211234 - 22211299
Alignment:
Q  1 tgcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacggctatt 66  Q
    ||||||||||||||| || |||| ||||||| ||||||||||||||| ||||||||||||| ||||    
T  22211234 tgcatttgttactatgagccgtacctcatagactacattatctcttcattgtagcaaacggatatt 22211299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 22208092 - 22208148
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||| ||||||| || |||| |||||||||||||||||||||||||||||||||||    
T  22208092 catttattactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 22208148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 14114887 - 14114832
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||||||| ||||||| ||| || ||||||||||||||||||||||||||||    
T  14114887 atttgttactatgagtcgtacctcgtaagctacattatctcttcgttgtagcaaac 14114832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 22207828 - 22207879
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacg 60  Q
    ||||||| || |||| ||||||||||||||||||||||||||||||||||||    
T  22207828 ttactatgagccgtaactcataggctacattatctcttcgttgtagcaaacg 22207879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 51844408 - 51844467
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||| |||||||| || |||| |||||| ||||||||||||||||||||||||||||||    
T  51844408 gcattcgttactatgagccgtacctcataagctacattatctcttcgttgtagcaaacgg 51844467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 14114958 - 14114903
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||||||| || || | ||| |||||||||||||||||||||||||||||||    
T  14114958 atttgttactatgagccgcacctcgtaggctacattatctcttcgttgtagcaaac 14114903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 22207964 - 22208014
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||| || |||| |||||||||||||||||||||| ||||||||||||    
T  22207964 ttactatgagccgtacctcataggctacattatctcttggttgtagcaaac 22208014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 15088567 - 15088619
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||| || |||| |||||| ||||||||||||||||||| ||||||||||    
T  15088567 ttactatgagccgtacctcatatgctacattatctcttcgttttagcaaacgg 15088619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 22207625 - 22207677
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||| || |||| |||||| |||||||||||||||||||||| |||||||    
T  22207625 ttactatgagccgtacctcatatgctacattatctcttcgttgtaacaaacgg 22207677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 22211175 - 22211227
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||| || |||| |||||| ||||||||||||||||||| ||||||||||    
T  22211175 ttactatgagccgtacctcatatgctacattatctcttcgttttagcaaacgg 22211227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 51844475 - 51844533
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacg 60  Q
    ||||| |||| ||| ||||||| ||||||||||||||||||||||| || || ||||||    
T  51844475 gcattcgttattatgagtcgtacctcataggctacattatctcttcattataacaaacg 51844533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6735446 - 6735388
Alignment:
Q  1 tgcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  6735446 tgcatttgttactatgagtcgtatctcataagctacattatctcttcgttgtagcaaac 6735388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 4852562 - 4852617
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  4852562 atttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaac 4852617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 5578311 - 5578260
Alignment:
Q  8 gttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5578311 gttactataagtcgtacctcataggctacattatctcttcgttgtagcaaac 5578260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 31663440 - 31663382
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  31663440 cattttttactatgagccgtatctcataggctacattatctcttcgttgtagcaaacgg 31663382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 31663639 - 31663585
Alignment:
Q  5 tttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  31663639 tttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaac 31663585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 5599782 - 5599834
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  5599782 ttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacgg 5599834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 13702608 - 13702664
Alignment:
Q  5 tttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||| |||| || |||||||||||||||||||||||||||||||||||||    
T  13702608 tttgttactatgagtcctacctcataggctacattatctcttcgttgtagcaaacgg 13702664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 13713101 - 13713157
Alignment:
Q  5 tttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||| |||| || |||||||||||||||||||||||||||||||||||||    
T  13713101 tttgttactatgagtcctacctcataggctacattatctcttcgttgtagcaaacgg 13713157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 14190480 - 14190536
Alignment:
Q  5 tttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  14190480 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 14190536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 4852631 - 4852686
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||||||| || |||| |||||||||||||||||||||||||||||||||||    
T  4852631 atttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 4852686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 5578509 - 5578454
Alignment:
Q  6 ttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||    
T  5578509 ttgttactatgagtcgtacctcgtaggctacattatctcttcgttgtagcaaacgg 5578454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 5909056 - 5909111
Alignment:
Q  6 ttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  5909056 ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 5909111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 13713299 - 13713357
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  13713299 cattcgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 13713357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 1505972 - 1506028
Alignment:
Q  5 tttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||| || ||||  ||||||||||||||||||||||||||||||||||||    
T  1505972 tttgttactatgagccgtacttcataggctacattatctcttcgttgtagcaaacgg 1506028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 5909119 - 5909175
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||| |||||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  5909119 cattcgttactatgagtcgttcctcataggctacattatctcttcgttgtagcaaac 5909175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 14190544 - 14190600
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||||||||| || |||| ||| |||||||||||||||||||||||||||||||    
T  14190544 catttgttactatgagccgtacctcgtaggctacattatctcttcgttgtagcaaac 14190600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 31663366 - 31663314
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  31663366 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 31663314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 13713234 - 13713289
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  13713234 atttattactatgagtcgtacctcataggctacattatctcttcgtcgtagcaaac 13713289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 1506103 - 1506161
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||| || |||| ||||||||||| |||||||||||||||||||||||||    
T  1506103 cattcgttactatgagccgtacctcataggctatattatctcttcgttgtagcaaacgg 1506161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 1506170 - 1506228
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||| || | || |||||||||||||||||||||||||||||||||||||    
T  1506170 cattcgttactatgagccatacctcataggctacattatctcttcgttgtagcaaacgg 1506228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 5599908 - 5599966
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||| || |||  |||||||||||||||||||||||||||||||||||||    
T  5599908 cattcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 5599966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 5599974 - 5600032
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||| || |||   ||||||||||||||||||||||||||||||||||||    
T  5599974 catttgttactatgagccgttcatcataggctacattatctcttcgttgtagcaaacgg 5600032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 13713172 - 13713222
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||| || |||| |||||||||||||||||||||||||||||||||||    
T  13713172 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 13713222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 1506037 - 1506093
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||| |||||||| || | || |||||||||||||||||||||||||||||||||||    
T  1506037 cattcgttactatgagccttacctcataggctacattatctcttcgttgtagcaaac 1506093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 1506236 - 1506292
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||| |||||||| || |||| |||||||||||||||||||||||||||| ||||||    
T  1506236 cattcgttactatgagccgtacctcataggctacattatctcttcgttgttgcaaac 1506292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 5599864 - 5599900
Alignment:
Q  25 ctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  5599864 ctcataggctacattatctcttcgttgtagcaaacgg 5599900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 31663485 - 31663449
Alignment:
Q  25 ctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  31663485 ctcataggctacattatctcttcgttgtagcaaacgg 31663449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 6735376 - 6735330
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgt 49  Q
    ||||||||||||| ||||||| |||||| ||||||||||||||||||    
T  6735376 catttgttactatgagtcgtacctcataagctacattatctcttcgt 6735330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 31663574 - 31663516
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||| | || |||| || |||||||||||||||||||| |||||||||||||    
T  31663574 catttgttactttgagccgtaccttataggctacattatctcttcattgtagcaaacgg 31663516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 4852715 - 4852756
Alignment:
Q  18 gtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||| |||||||||||||||||||||||| ||||||||||    
T  4852715 gtcgtacctcataggctacattatctcttcggtgtagcaaac 4852756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 13713371 - 13713424
Alignment:
Q  8 gttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| ||| |||| || |||||||| ||||||||||||||||||||||||||||    
T  13713371 gttattatgagtcatacctcataggatacattatctcttcgttgtagcaaacgg 13713424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 5578379 - 5578327
Alignment:
Q  6 ttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaa 58  Q
    |||||||||| || | || ||||| ||||||||||||||||||||||||||||    
T  5578379 ttgttactatgagccatacctcattggctacattatctcttcgttgtagcaaa 5578327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 31663297 - 31663245
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||| ||| ||| ||||||||||||||||||| ||| |||||||||||||    
T  31663297 ttactatgagttgtacctcataggctacattatctattcattgtagcaaacgg 31663245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 26620508 - 26620452
Alignment:
Q  5 tttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  26620508 tttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacgg 26620452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 26726487 - 26726431
Alignment:
Q  5 tttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  26726487 tttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacgg 26726431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 26620444 - 26620386
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacg 60  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  26620444 gcattcgttactataagccgtacctcataggctacattatctcttcgttgtagcaaacg 26620386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 26726423 - 26726365
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacg 60  Q
    ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  26726423 gcattcgttactataagccgtacctcataggctacattatctcttcgttgtagcaaacg 26726365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 28145140 - 28145198
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  28145140 catttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 28145198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 6406589 - 6406645
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||    
T  6406589 catttgttattatgagtcgtacctcataggctacattatctcttcgttgtagcaaac 6406645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 28145206 - 28145265
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||||| || ||||  ||||||||||||||||||||||||||||||||||||    
T  28145206 gcatttgttactatgagccgtacatcataggctacattatctcttcgttgtagcaaacgg 28145265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 29934676 - 29934621
Alignment:
Q  6 ttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  29934676 ttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 29934621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 28145272 - 28145332
Alignment:
Q  1 tgcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||| |||||||| || |||| ||||||| |||||||||||||||||||||||||||||    
T  28145272 tgcattcgttactatgagccgtacctcatagactacattatctcttcgttgtagcaaacgg 28145332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 34255714 - 34255662
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||| ||||||  |||||||||||||||||||||||||||||||||||||    
T  34255714 ttactatgagtcgttcctcataggctacattatctcttcgttgtagcaaacgg 34255662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 33296126 - 33296087
Alignment:
Q  20 cgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33296126 cgtatctcataggctacattatctcttcgttgtagcaaac 33296087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 5250066 - 5250016
Alignment:
Q  8 gttactataagtcgtatctcataggctacattatctcttcgttgtagcaaa 58  Q
    |||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  5250066 gttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 5250016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 26726356 - 26726298
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||| || |||| |||||| ||||||||||||||||||||||||||||||    
T  26726356 cattcgttactatgagccgtacctcataagctacattatctcttcgttgtagcaaacgg 26726298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 34255522 - 34255464
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||| || |||  |||||||||||||||||||||||||||||||||||||    
T  34255522 cattcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 34255464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 34255588 - 34255530
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||| | || |||  |||||||||||||||||||||||||||||||||||||    
T  34255588 catttgttactttgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 34255530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 5250005 - 5249948
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||||||||| || |||| ||||||  |||||||||||||||||||||||||||    
T  5250005 gcatttgttactatgagccgtacctcatacactacattatctcttcgttgtagcaaac 5249948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 28145074 - 28145131
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||| ||  ||| |||||||||||||||||||||| ||||||||||||||    
T  28145074 atttgttactatgagctgtacctcataggctacattatctctttgttgtagcaaacgg 28145131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 31113214 - 31113158
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||||||||| ||   || |||||||||||||||||||||||||||||||||||    
T  31113214 catttgttactatgagctatacctcataggctacattatctcttcgttgtagcaaac 31113158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 34255654 - 34255598
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||| |||||||| || |||  |||||||||||||||||||||||||||||||||||    
T  34255654 cattcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 34255598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 5250134 - 5250085
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaa 58  Q
    ||||||| ||| ||| ||||||||||||||||| ||||||||||||||||    
T  5250134 ttactatgagttgtacctcataggctacattatttcttcgttgtagcaaa 5250085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 29934591 - 29934558
Alignment:
Q  25 ctcataggctacattatctcttcgttgtagcaaa 58  Q
    ||||||||||||||||||||||||||||||||||    
T  29934591 ctcataggctacattatctcttcgttgtagcaaa 29934558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 31113280 - 31113227
Alignment:
Q  5 tttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaa 58  Q
    ||||||| ||| |||| || |||||| |||||||||||||||||||||||||||    
T  31113280 tttgttaatatgagtcatacctcataagctacattatctcttcgttgtagcaaa 31113227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 6406519 - 6406570
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgta 53  Q
    |||||||||||||| || |||| ||||||||||||||||| ||||| |||||    
T  6406519 gcatttgttactatgagccgtacctcataggctacattatttcttcattgta 6406570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 61
Target Start/End: Complemental strand, 26620352 - 26620321
Alignment:
Q  30 aggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||||||||||||||||||||||    
T  26620352 aggctacattatctcttcgttgtagcaaacgg 26620321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 61
Target Start/End: Complemental strand, 26726265 - 26726234
Alignment:
Q  30 aggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||||||||||||||||||||||    
T  26726265 aggctacattatctcttcgttgtagcaaacgg 26726234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 5835615 - 5835671
Alignment:
Q  5 tttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  5835615 tttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacgg 5835671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 19480050 - 19479990
Alignment:
Q  1 tgcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||    
T  19480050 tgcatttgttactatgagtcgtacctcataggctatattatctcttcgttgtagcaaacgg 19479990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 5938781 - 5938840
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||    
T  5938781 gcatttgttactatgagtcgtacctcataggctatattatctcttcgttgtagcaaacgg 5938840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 5938916 - 5938974
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  5938916 catttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 5938974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 18111435 - 18111493
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  18111435 catttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 18111493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 28034722 - 28034777
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||    
T  28034722 atttgttactatgagttgtacctcataggctacattatctcttcgttgtagcaaac 28034777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 5938717 - 5938771
Alignment:
Q  5 tttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||    
T  5938717 tttgttactatgagtcgtacctcatagtctacattatctcttcgttgtagcaaac 5938771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 5938849 - 5938907
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||| || |||| |||||||||||||| ||||||||||||||||||||||    
T  5938849 catttgttactatgagccgtacctcataggctacatcatctcttcgttgtagcaaacgg 5938907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 18111569 - 18111627
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  18111569 cattttttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 18111627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 19441048 - 19441105
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||||| |||||||||||    
T  19441048 atttgttactatgagtcgtacctcatagactacattatctcttcgtcgtagcaaacgg 19441105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 19441113 - 19441170
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||||||||  || |||| |||||||||||||||||||||||||||||||||||    
T  19441113 gcatttgttactacgagccgtacctcataggctacattatctcttcgttgtagcaaac 19441170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 19384083 - 19384139
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaa 58  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||||    
T  19384083 gcattcgttactatgagtcgtacctcataggctacattatctcttcgtcgtagcaaa 19384139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 28034793 - 28034845
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  28034793 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 28034845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 14521164 - 14521109
Alignment:
Q  6 ttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||| || |||| |||||| ||||||||||||||||||||||||||||||    
T  14521164 ttgttactatgagccgtacctcatacgctacattatctcttcgttgtagcaaacgg 14521109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 45227289 - 45227234
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaa 58  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  45227289 catttcttactataagtcgtacctcatgggctacattatctcttcattgtagcaaa 45227234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 5938983 - 5939041
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||| ||||||| || |||| ||||||| |||||||||||||||||||||||||||||    
T  5938983 catttattactatgagccgtacctcatagactacattatctcttcgttgtagcaaacgg 5939041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 18111502 - 18111560
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||| ||| ||  ||| |||||||||||||||||||||||||||||||||||||    
T  18111502 catttgttattatgagcggtacctcataggctacattatctcttcgttgtagcaaacgg 18111560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 29897056 - 29897108
Alignment:
Q  8 gttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacg 60  Q
    |||||||| || |||| ||||||||||||||||| ||||||||||||||||||    
T  29897056 gttactatgagccgtacctcataggctacattatttcttcgttgtagcaaacg 29897108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 29897110 - 29897162
Alignment:
Q  7 tgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||||| || |||| |||||||||||||||||||||| ||||||||||||    
T  29897110 tgttactatgagccgtacctcataggctacattatctctttgttgtagcaaac 29897162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 14521101 - 14521046
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaa 58  Q
    |||| |||||||| || |||  ||||||||||||||||||||||||||||||||||    
T  14521101 cattcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaa 14521046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 28034659 - 28034710
Alignment:
Q  8 gttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||| || |||| ||||||||||||||||| |||||||||||||||||    
T  28034659 gttactatgagccgtacctcataggctacattatttcttcgttgtagcaaac 28034710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 2746844 - 2746786
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||| ||||||| || |||| ||||||||||  |||||||||||||||||||||||||    
T  2746844 cattttttactatgagccgtacctcataggctttattatctcttcgttgtagcaaacgg 2746786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 19384198 - 19384256
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||| || |||| |||||||| |||||||||||||||| |||||||||||    
T  19384198 cattcgttactatgagccgtacctcataggttacattatctcttcgtcgtagcaaacgg 19384256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 19384326 - 19384375
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttg 51  Q
    ||||| |||||||| || |||| |||||||||||||||||||||||||||    
T  19384326 gcattcgttactatgagccgtacctcataggctacattatctcttcgttg 19384375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 19384282 - 19384318
Alignment:
Q  25 ctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||||||||||||||| |||||||||||    
T  19384282 ctcataggctacattatctcttcgtcgtagcaaacgg 19384318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 45227332 - 45227300
Alignment:
Q  27 cataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||||||||||||||||||||||||||||    
T  45227332 cataggctacattatctcttcgttgtagcaaac 45227300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 19480152 - 19480118
Alignment:
Q  33 ctacattatctcttcgttgtagcaaacggctatta 67  Q
    |||||||||||||||||||||||||||| ||||||    
T  19480152 ctacattatctcttcgttgtagcaaacgactatta 19480118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 19384149 - 19384190
Alignment:
Q  20 cgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||| |||||||||||||||| |||||||||||    
T  19384149 cgtacctcataggttacattatctcttcgtcgtagcaaacgg 19384190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 40056 - 40001
Alignment:
Q  5 tttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacg 60  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  40056 tttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaacg 40001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 39985 - 39935
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||| |||| || |||||||||||||||||||||||||||||||||||    
T  39985 ttactatgagtcatacctcataggctacattatctcttcgttgtagcaaac 39935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 4341208 - 4341265
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  4341208 atttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 4341265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 21958616 - 21958559
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||    
T  21958616 atttgttactatgagtcgtacctcataggctatattatctcttcgttgtagcaaacgg 21958559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 15695509 - 15695449
Alignment:
Q  1 tgcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||||||||| | || |||||||||||||||||||||| ||||||||||||||    
T  15695509 tgcatttgttactataagccttacctcataggctacattatctcttagttgtagcaaacgg 15695449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 15702489 - 15702429
Alignment:
Q  1 tgcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||||||||| | || |||||||||||||||||||||| ||||||||||||||    
T  15702489 tgcatttgttactataagccttacctcataggctacattatctcttagttgtagcaaacgg 15702429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 3078714 - 3078659
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||    
T  3078714 atttgttactgtaagtcgtacctcataggctacattatctcatcgttgtagcaaac 3078659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 4341405 - 4341464
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||| |||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  4341405 gcattcgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 4341464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 21958551 - 21958492
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||||| || | || |||||||||||||||||||||||||||||||||||||    
T  21958551 gcatttgttactatgagccatacctcataggctacattatctcttcgttgtagcaaacgg 21958492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 42786030 - 42785975
Alignment:
Q  6 ttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  42786030 ttgttactatcagccgtacctcataggctacattatctcttcgttgtagcaaacgg 42785975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 34456459 - 34456401
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  34456459 cattttttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 34456401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 42785967 - 42785909
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||| || |||  |||||||||||||||||||||||||||||||||||||    
T  42785967 catttgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 42785909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 3081325 - 3081381
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||    
T  3081325 atttgttactatgagtcgtacctcataggctacattatct-ttcgttgtagcaaacgg 3081381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 34456387 - 34456335
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  34456387 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 34456335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 3081187 - 3081242
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||||    
T  3081187 atttgttactatgagtcgtacctcataggctgcattatctcatcgttgtagcaaac 3081242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3078570 - 3078512
Alignment:
Q  1 tgcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||| |||||||| ||||||| ||||||| ||||||||||||||||||||| |||||    
T  3078570 tgcattcgttactatgagtcgtacctcatagactacattatctcttcgttgtaacaaac 3078512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 4341273 - 4341331
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||| || |||  |||||||||||||||||||||||||||||||||||||    
T  4341273 cattcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 4341331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 4341340 - 4341398
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||| || |||| |||||| ||||||||||||||||||||||||||||||    
T  4341340 cattcgttactatgagccgtacctcataagctacattatctcttcgttgtagcaaacgg 4341398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 34456526 - 34456468
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||| || ||||  |||||| |||||||||||||||||||||||||||||    
T  34456526 catttgttactatgagccgtacttcatagactacattatctcttcgttgtagcaaacgg 34456468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 48477939 - 48477997
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||| || |||  |||||||||||||||||||||||||||||||||||||    
T  48477939 cattcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 48477997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 48478267 - 48478325
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||| || |||  |||||||||||||||||||||||||||||||||||||    
T  48478267 cattcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 48478325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 48478333 - 48478391
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||| || |||   ||||||||||||||||||||||||||||||||||||    
T  48478333 catttgttactatgagccgttcatcataggctacattatctcttcgttgtagcaaacgg 48478391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 3081119 - 3081172
Alignment:
Q  5 tttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaa 58  Q
    |||| |||||| ||||||| |||||||||||| |||||||||||||||||||||    
T  3081119 tttgatactatgagtcgtacctcataggctacgttatctcttcgttgtagcaaa 3081172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 3081388 - 3081445
Alignment:
Q  1 tgcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaa 58  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||||| ||||| ||||||    
T  3081388 tgcatttgttactatgagtcgtacctcattggctacattatctctccgttgcagcaaa 3081445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 3078629 - 3078577
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||| || |||| ||||||||||||||||||| |||||||||||||||||    
T  3078629 ttactatgagccgtacctcataggctacattatctattcgttgtagcaaacgg 3078577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 48478027 - 48478063
Alignment:
Q  25 ctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  48478027 ctcataggctacattatctcttcgttgtagcaaacgg 48478063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 48478093 - 48478129
Alignment:
Q  25 ctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  48478093 ctcataggctacattatctcttcgttgtagcaaacgg 48478129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 48478223 - 48478259
Alignment:
Q  25 ctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  48478223 ctcataggctacattatctcttcgttgtagcaaacgg 48478259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 21958484 - 21958425
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||||| || |||| |||||||| ||||||||||||| ||| ||||||||||    
T  21958484 gcatttgttactatgagccgtacctcataggttacattatctctttgttttagcaaacgg 21958425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 15695441 - 15695391
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgt 52  Q
    |||||||||||||| ||  ||| ||||||||||||||||||||||||||||    
T  15695441 gcatttgttactatgagctgtacctcataggctacattatctcttcgttgt 15695391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 15702421 - 15702371
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgt 52  Q
    |||||||||||||| ||  ||| ||||||||||||||||||||||||||||    
T  15702421 gcatttgttactatgagctgtacctcataggctacattatctcttcgttgt 15702371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 33616016 - 33615958
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||| || || |||| ||||||| ||||||| |||||||||||||||||||||    
T  33616016 catttgttaccatgagccgtacctcatagactacattgtctcttcgttgtagcaaacgg 33615958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 3081256 - 3081311
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||||||| ||||||| | |||||||| ||||||||| || |||||||||||    
T  3081256 atttgttactatgagtcgtaccccataggctgcattatctcatcattgtagcaaac 3081311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 3078782 - 3078728
Alignment:
Q  5 tttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||| |||||| || |||| |||||| ||||| ||||||||||||||||||||||    
T  3078782 tttgatactatgagccgtacctcataagctacgttatctcttcgttgtagcaaac 3078728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 69827 - 69771
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||    
T  69827 catttgttactatgagttgtacctcataggctacattatctcttcgttgtagcaaac 69771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 69760 - 69704
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||||||||| || |||| ||||||||||||||||||||||| |||||||||||    
T  69760 catttgttactatgagccgtacctcataggctacattatctcttcattgtagcaaac 69704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 69892 - 69836
Alignment:
Q  5 tttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||| ||||||   |||||||||| |||||||||||||||||||||||||    
T  69892 tttgttactatgagtcgtgcatcataggctatattatctcttcgttgtagcaaacgg 69836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 3166059 - 3166007
Alignment:
Q  6 ttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaa 58  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  3166059 ttgttactatgagtcgtacctcataggctacattatctcttcgttgtagcaaa 3166007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 25336594 - 25336650
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||    
T  25336594 catttgttactatgagttgtacctcataggctacattatctcttcgttgtagcaaac 25336650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26082092 - 26082152
Alignment:
Q  1 tgcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||||||    
T  26082092 tgcatttgttaatatgagtcgtacctcataggctacattatctctccgttgtagcaaacgg 26082152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 5558013 - 5558071
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||| ||||||  ||||| |||||||||||||||||||||||||||||||    
T  5558013 catttgttactatgagtcgttcctcatcggctacattatctcttcgttgtagcaaacgg 5558071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 25336661 - 25336719
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||| || |||| ||||||||||||||||||| |||||||||||||||||    
T  25336661 catttgttactatgagccgtacctcataggctacattatcttttcgttgtagcaaacgg 25336719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 5557880 - 5557936
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||||||||| || |||  |||||||||||||||||||||||||||||||||||    
T  5557880 catttgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaac 5557936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3165864 - 3165806
Alignment:
Q  1 tgcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||| |||||||||| || |||| |||||| ||||||||||||||||||||||||||||    
T  3165864 tgcacttgttactatgagacgtacctcataagctacattatctcttcgttgtagcaaac 3165806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3165931 - 3165873
Alignment:
Q  1 tgcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||| |||||||||| || |||| |||||| ||||||||||||||||||||||||||||    
T  3165931 tgcaattgttactatgagacgtacctcataagctacattatctcttcgttgtagcaaac 3165873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 5557814 - 5557872
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||| || |||  |||||||||||||||||||||||||||||||||||||    
T  5557814 cattcgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 5557872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 20810376 - 20810335
Alignment:
Q  25 ctcataggctacattatctcttcgttgtagcaaacggctatt 66  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  20810376 ctcataggctacattatctcttcgttgtagcaaacggatatt 20810335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 25336472 - 25336521
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaa 58  Q
    ||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  25336472 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaa 25336521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 3166127 - 3166075
Alignment:
Q  5 tttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaa 57  Q
    ||||||||||| || |||| || ||||||||||||||||||||||||||||||    
T  3166127 tttgttactatgagccgtaccttataggctacattatctcttcgttgtagcaa 3166075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 5557770 - 5557806
Alignment:
Q  25 ctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||||||||||||||||||||||||||||||||    
T  5557770 ctcataggctacattatctcttcgttgtagcaaacgg 5557806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 5557946 - 5558005
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctc-ttcgttgtagcaaacgg 61  Q
    ||||||||||||| || |||  |||||||||||||||||||| |||||||||||||||||    
T  5557946 catttgttactatgagccgttcctcataggctacattatctctttcgttgtagcaaacgg 5558005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 20810448 - 20810409
Alignment:
Q  20 cgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  20810448 cgtacctcataggctacattatctcttcgttgtagcaaac 20810409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 3165992 - 3165940
Alignment:
Q  6 ttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||||| ||||||| |||||||||| ||||||||||||| ||||||||||    
T  3165992 ttgttactatgagtcgtacctcataggctgcattatctcttcg-tgtagcaaac 3165940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 5557707 - 5557740
Alignment:
Q  28 ataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||||||||||||||||||||||||    
T  5557707 ataggctacattatctcttcgttgtagcaaacgg 5557740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 25336552 - 25336585
Alignment:
Q  28 ataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||||||||||||||||||||||||    
T  25336552 ataggctacattatctcttcgttgtagcaaacgg 25336585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 26082043 - 26082084
Alignment:
Q  20 cgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  26082043 cgtacctcataggctacattatcacttcgttgtagcaaacgg 26082084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 21542118 - 21542084
Alignment:
Q  20 cgtatctcataggctacattatctcttcgttgtag 54  Q
    |||| ||||||||||||||||||||||||||||||    
T  21542118 cgtacctcataggctacattatctcttcgttgtag 21542084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 4844103 - 4844047
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacg 60  Q
    ||||||||| ||| || |||| ||||||||||||||||||| ||||||||| ||||||    
T  4844103 catttgttattatgag-cgtacctcataggctacattatctattcgttgtaacaaacg 4844047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 90474 - 90528
Alignment:
Q  5 tttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||||||| || |||| |||||||||||||||||||||||||||||||||||    
T  90474 tttgttactatgagccgtacctcataggctacattatctcttcgttgtagcaaac 90528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 90538 - 90595
Alignment:
Q  2 gcatttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||||||||| || |||| ||||||||| | |||||||||||||||||||||||    
T  90538 gcatttgttactatgagccgtacctcataggcaaaattatctcttcgttgtagcaaac 90595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 90609 - 90663
Alignment:
Q  4 atttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    |||||||||||| || |||| ||||||||||||||||||| |||||||||||||||    
T  90609 atttgttactatgagccgta-ctcataggctacattatctattcgttgtagcaaac 90663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 41528501 - 41528559
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||| || |||  |||||||||||||||||||||||||||||||||||||    
T  41528501 catttgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 41528559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 41528567 - 41528625
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||| || |||  |||||||||||||||||||||||||||||||||||||    
T  41528567 catttgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 41528625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 41528633 - 41528691
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||||||||| || |||  |||||||||||||||||||||||||||||||||||||    
T  41528633 catttgttactatgagccgttcctcataggctacattatctcttcgttgtagcaaacgg 41528691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 37368975 - 37368923
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||| |||| |||| |||||||||||||||||||||||||||||||||||||    
T  37368975 ttactgtaagccgtacctcataggctacattatctcttcgttgtagcaaacgg 37368923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 41528441 - 41528493
Alignment:
Q  9 ttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    ||||||| || |||| |||||||||||||||||||||||||||||||||||||    
T  41528441 ttactatgagccgtacctcataggctacattatctcttcgttgtagcaaacgg 41528493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 37369044 - 37368991
Alignment:
Q  8 gttactataagtcgtatctcataggctacattatctcttcgttgtagcaaacgg 61  Q
    |||||||| ||||||| |||||||||||||||||||||| ||||||| ||||||    
T  37369044 gttactatgagtcgtacctcataggctacattatctctttgttgtagtaaacgg 37368991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 3621 - 3677
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgtagcaaac 59  Q
    ||||||||||||| |  |||| |||||||||||||||||||||||||||||||||||    
T  3621 catttgttactatgacccgtacctcataggctacattatctcttcgttgtagcaaac 3677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 3688 - 3737
Alignment:
Q  3 catttgttactataagtcgtatctcataggctacattatctcttcgttgt 52  Q
    ||||||||||||| || |||| ||||||||||||||||||||||||||||    
T  3688 catttgttactatgagccgtacctcataggctacattatctcttcgttgt 3737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3552 - 3604
Alignment:
Q  1 tgcatttgttactataagtcgtatctcataggctacattatctcttcgttgta 53  Q
    ||||||| ||||||| || | || |||||||||||||||||||||||||||||    
T  3552 tgcatttcttactatgagccttacctcataggctacattatctcttcgttgta 3604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University