View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5776_low_4 (Length: 242)
Name: NF5776_low_4
Description: NF5776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5776_low_4 |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 13674499 - 13674729
Alignment:
| Q |
15 |
tcatcagttttaattaattgcaaggttcttgtttccatacataattgatagttaactacctttgtccgtacttatgttgttggggatcttgttgtcttgc |
114 |
Q |
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| T |
13674499 |
tcatcagtttcaatcaattgcaaggttcttgtttccatacataattgatagttaactacctttgtccgtacatatgttgttggggatcttgttgtcttgc |
13674598 |
T |
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| Q |
115 |
atggatattgagttttagtggtctttctccatgcaatccctgatttcttcatag---ctggacgaaattgaactcttccaaatatcttcgaaagatctta |
211 |
Q |
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| T |
13674599 |
atggatattgagttttagtggtctttctccatgcaatccctgatttcttcatagctcctggacgaaattgaactcttccaaatattttcgaaagatctta |
13674698 |
T |
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| Q |
212 |
tcaaagaagcgtccaactagatcggttcttt |
242 |
Q |
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| T |
13674699 |
ccaaagaagcgtccaactggattgattcttt |
13674729 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 32475441 - 32475491
Alignment:
| Q |
192 |
aatatcttcgaaagatcttatcaaagaagcgtccaactagatcggttcttt |
242 |
Q |
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| T |
32475441 |
aatatctttgaaagatctaatcaaataagcgtccaactcgatcggtccttt |
32475491 |
T |
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