View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5777-Insertion-4 (Length: 369)
Name: NF5777-Insertion-4
Description: NF5777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5777-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 10 - 364
Target Start/End: Complemental strand, 2387588 - 2387234
Alignment:
| Q |
10 |
atactatatagtatttgcattaagagatccattaacctttgttggagtctgagtcataaccactcatatttaagcatatatgagactaaagttttctaca |
109 |
Q |
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| T |
2387588 |
atactatatagtatttgcattaagagatccattaacctttgttggagtctgagtcataaccactcatatttaagcatatatgagactaaagttttctacg |
2387489 |
T |
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| Q |
110 |
gtttttgaagagttcaggtgcccttatcaatcaatgaacaatttgttacttttccaagtcagattctacatttcaccagaatatccacctaaattttgat |
209 |
Q |
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| T |
2387488 |
gtttttgaagagttcaggtgcccttatcaatcaatgaacaatttgttacttttccaagtcagattctacatttcaccagaatatccacctaaattttgat |
2387389 |
T |
|
| Q |
210 |
taaaaaagaatatgaaacnnnnnnncatgtaatctacagaagaaaaattttaccataacttttcattttactactattcaatttctctaagcaaagactg |
309 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2387388 |
taaaaaagaatatgaaactttttttcatgtaatctacagaagaaaatttttaccataacttttcattttactactattcaatttctctaagcaaagactg |
2387289 |
T |
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| Q |
310 |
tatcatatcgtgtccgcgttcgagtctgtgctactatatcatatcgtgtccgcat |
364 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||| |||||||||| |
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| T |
2387288 |
tatcatatcgtgtccgcgtccgagtctgtgctactgtatcatattgtgtccgcat |
2387234 |
T |
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