View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5777_high_1 (Length: 549)

Name: NF5777_high_1
Description: NF5777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5777_high_1
NF5777_high_1
[»] scaffold0164 (1 HSPs)
scaffold0164 (187-529)||(10015-10362)
[»] chr5 (6 HSPs)
chr5 (187-529)||(14477265-14477612)
chr5 (1-55)||(32699134-32699188)
chr5 (1-55)||(43323378-43323432)
chr5 (136-187)||(43323249-43323300)
chr5 (139-188)||(32699271-32699320)
chr5 (5-48)||(21491699-21491742)
[»] chr7 (10 HSPs)
chr7 (136-188)||(10015276-10015328)
chr7 (1-63)||(10015398-10015460)
chr7 (139-187)||(37548315-37548363)
chr7 (1-55)||(37548444-37548498)
chr7 (1-63)||(36628853-36628915)
chr7 (5-48)||(14574248-14574291)
chr7 (5-48)||(15995411-15995454)
chr7 (150-187)||(30081983-30082020)
chr7 (5-53)||(12380192-12380240)
chr7 (139-187)||(36628991-36629039)
[»] chr4 (5 HSPs)
chr4 (1-63)||(56366540-56366602)
chr4 (136-188)||(56366418-56366470)
chr4 (7-63)||(25201831-25201887)
chr4 (5-55)||(49243117-49243167)
chr4 (5-37)||(14032898-14032930)
[»] chr3 (7 HSPs)
chr3 (1-55)||(9467131-9467185)
chr3 (1-55)||(33443931-33443985)
chr3 (136-187)||(33444063-33444114)
chr3 (139-187)||(9467002-9467050)
chr3 (5-47)||(36641630-36641672)
chr3 (5-48)||(23044476-23044519)
chr3 (5-53)||(22918066-22918114)
[»] scaffold0065 (2 HSPs)
scaffold0065 (1-55)||(66694-66748)
scaffold0065 (140-187)||(66832-66879)
[»] chr8 (3 HSPs)
chr8 (1-55)||(12700607-12700661)
chr8 (150-188)||(2807427-2807465)
chr8 (141-187)||(40971736-40971782)
[»] chr6 (6 HSPs)
chr6 (139-189)||(4090314-4090364)
chr6 (7-55)||(30358995-30359043)
chr6 (5-46)||(4064843-4064884)
chr6 (5-37)||(18616994-18617026)
chr6 (7-55)||(30359812-30359860)
chr6 (5-53)||(31474253-31474301)
[»] chr2 (3 HSPs)
chr2 (1-55)||(9913368-9913422)
chr2 (5-55)||(25471726-25471776)
chr2 (5-37)||(43672518-43672550)
[»] chr1 (4 HSPs)
chr1 (5-55)||(33051183-33051233)
chr1 (141-188)||(28945235-28945282)
chr1 (9-53)||(9957548-9957592)
chr1 (9-53)||(32178244-32178288)
[»] scaffold0385 (1 HSPs)
scaffold0385 (7-63)||(1133-1189)


Alignment Details
Target: scaffold0164 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 187 - 529
Target Start/End: Original strand, 10015 - 10362
Alignment:
Q  187 gcgaaataacgttccttgcacctaaaattgctagcattcttgtatgttggtgacctcataaat----attccttgttttacacaacttcagccatcgatg 282  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||    
T  10015 gcgaaataacgttccttgcacctaaa-ttgctagcattcttgtatgttggtgacctcataaatgactattccttgttttacacaacttcagccatcgatg 10113  T
Q  283 cagttattgagatttatccagaagaagagaataatcctttgcacagtggttattttgtgtacaaactctaggta--gctctcttgaatgtgaaaaaacta 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  ||||||||||||||||||||||||    
T  10114 cagttattgagatttatccagaagaagagaataatcctttgcacagtggttattttgtgtacaaactcttagtatagctctcttgaatgtgaaaaaacta 10213  T
Q  381 tcaatttgtgacttttctctcgaggtacgtggtctcactgccttaacttttatttactaaatactctcactattttacaatgagtgtcacatttggtttg 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10214 tcaatttgtgacttttctctcgaggtacgtggtctcactgccttaacttttatttactaaatactctcactattttacaatgagtgtcacatttggtttg 10313  T
Q  481 tttcaattttttaaggagaatctataaatgaaacaaaaaatgttaattt 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10314 tttcaattttttaaggagaatctataaatgaaacaaaaaatgttaattt 10362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 187 - 529
Target Start/End: Original strand, 14477265 - 14477612
Alignment:
Q  187 gcgaaataacgttccttgcacctaaaattgctagcattcttgtatgttggtgacctcataaat----attccttgttttacacaacttcagccatcgatg 282  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||    
T  14477265 gcgaaataacgttccttgcacctaaa-ttgctagcattcttgtatgttggtgacctcataaatgactattccttgttttacacaacttcagccatcgatg 14477363  T
Q  283 cagttattgagatttatccagaagaagagaataatcctttgcacagtggttattttgtgtacaaactctaggta--gctctcttgaatgtgaaaaaacta 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||  ||||||||||||||||||||||||    
T  14477364 cagttattgagatttatccagaagaagagaataatcctttgcacagtggttattttgtgtacaaactcttagtatagctctcttgaatgtgaaaaaacta 14477463  T
Q  381 tcaatttgtgacttttctctcgaggtacgtggtctcactgccttaacttttatttactaaatactctcactattttacaatgagtgtcacatttggtttg 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14477464 tcaatttgtgacttttctctcgaggtacgtggtctcactgccttaacttttatttactaaatactctcactattttacaatgagtgtcacatttggtttg 14477563  T
Q  481 tttcaattttttaaggagaatctataaatgaaacaaaaaatgttaattt 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14477564 tttcaattttttaaggagaatctataaatgaaacaaaaaatgttaattt 14477612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32699134 - 32699188
Alignment:
Q  1 ttgctttctattgagtatttgatttattttaagatgtaacctaaaaaatatttat 55  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  32699134 ttgctttctatttagtatttgatttattttaagatgtagcctaaaaaatatttat 32699188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 43323432 - 43323378
Alignment:
Q  1 ttgctttctattgagtatttgatttattttaagatgtaacctaaaaaatatttat 55  Q
    |||||||||||||||||||||||||| ||||||||||| | ||||||||||||||    
T  43323432 ttgctttctattgagtatttgatttaatttaagatgtagcttaaaaaatatttat 43323378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 43323300 - 43323249
Alignment:
Q  136 ggtcctttttcattctatgcctaaggcccctaaaatgttaggaacggccctg 187  Q
    |||||||||||||||||| ||| |||||||||||||| ||||||||||||||    
T  43323300 ggtcctttttcattctatacctcaggcccctaaaatgctaggaacggccctg 43323249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 32699271 - 32699320
Alignment:
Q  139 cctttttcattctatgcctaaggcccctaaaatgttaggaacggccctgc 188  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||    
T  32699271 cctttttcattctatgcctaaggcccctaaaatactaggaacggtcctgc 32699320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 21491742 - 21491699
Alignment:
Q  5 tttctattgagtatttgatttattttaagatgtaacctaaaaaa 48  Q
    |||||||||||||||||||||||||||| ||||  |||||||||    
T  21491742 tttctattgagtatttgatttattttaaaatgttgcctaaaaaa 21491699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 10015328 - 10015276
Alignment:
Q  136 ggtcctttttcattctatgcctaaggcccctaaaatgttaggaacggccctgc 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10015328 ggtcctttttcattctatgcctaaggcccctaaaatgttaggaacggccctgc 10015276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10015460 - 10015398
Alignment:
Q  1 ttgctttctattgagtatttgatttattttaagatgtaacctaaaaaatatttatatgatagt 63  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  10015460 ttgctttttattgagtatttgatttattttaagatgtagcctaaaaaatatttatctgatagt 10015398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 37548363 - 37548315
Alignment:
Q  139 cctttttcattctatgcctaaggcccctaaaatgttaggaacggccctg 187  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37548363 cctttttcattctatgcctaaggcccctaaaatgctaggaacggccctg 37548315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37548498 - 37548444
Alignment:
Q  1 ttgctttctattgagtatttgatttattttaagatgtaacctaaaaaatatttat 55  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  37548498 ttgctttctattgagtatttgatttaatttaagatgtagcctaaaaaagatttat 37548444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 36628853 - 36628915
Alignment:
Q  1 ttgctttctattgagtatttgatttattttaagatgtaacctaaaaaatatttatatgatagt 63  Q
    ||||||||||||| ||||||||||||||||||||| || | || |||||||||||||| ||||    
T  36628853 ttgctttctattgtgtatttgatttattttaagatttagcttataaaatatttatatggtagt 36628915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 14574248 - 14574291
Alignment:
Q  5 tttctattgagtatttgatttattttaagatgtaacctaaaaaa 48  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  14574248 tttctattgagtatttgatttattttaagatgttgcctaaaaaa 14574291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 15995411 - 15995454
Alignment:
Q  5 tttctattgagtatttgatttattttaagatgtaacctaaaaaa 48  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  15995411 tttctattgagtatttgatttattttaagatgttgcctaaaaaa 15995454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 30082020 - 30081983
Alignment:
Q  150 ctatgcctaaggcccctaaaatgttaggaacggccctg 187  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  30082020 ctatgcctaaggcccctaaaatgctaggaacggccctg 30081983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 12380192 - 12380240
Alignment:
Q  5 tttctattgagtatttgatttattttaagatgtaacctaaaaaatattt 53  Q
    |||||||||||||| ||||||||||||||||||  ||||||||| ||||    
T  12380192 tttctattgagtatctgatttattttaagatgttgcctaaaaaacattt 12380240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 36628991 - 36629039
Alignment:
Q  139 cctttttcattctatgcctaaggcccctaaaatgttaggaacggccctg 187  Q
    |||| |||||||||| |||||||||||||||||| |||||||| |||||    
T  36628991 ccttcttcattctatacctaaggcccctaaaatgctaggaacgaccctg 36629039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 56366602 - 56366540
Alignment:
Q  1 ttgctttctattgagtatttgatttattttaagatgtaacctaaaaaatatttatatgatagt 63  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  56366602 ttgctttttattgagtatttgatttattttaagatgtagcctaaaaaatatttatctgatagt 56366540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 56366470 - 56366418
Alignment:
Q  136 ggtcctttttcattctatgcctaaggcccctaaaatgttaggaacggccctgc 188  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  56366470 ggtcatttttcattctatgcctaaggcccctaaaatgctaggaacggccctgc 56366418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 25201831 - 25201887
Alignment:
Q  7 tctattgagtatttgatttattttaagatgtaacctaaaaaatatttatatgatagt 63  Q
    ||||| |||||||||||||||||| ||||||  |||||||||||||||| |||||||    
T  25201831 tctatggagtatttgatttatttttagatgttgcctaaaaaatatttatttgatagt 25201887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 49243117 - 49243167
Alignment:
Q  5 tttctattgagtatttgatttattttaagatgtaacctaaaaaatatttat 55  Q
    |||||||||| | |||||||||||||||| ||| |||||||||| ||||||    
T  49243117 tttctattgaatgtttgatttattttaaggtgttacctaaaaaacatttat 49243167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 14032930 - 14032898
Alignment:
Q  5 tttctattgagtatttgatttattttaagatgt 37  Q
    |||||||||||||| ||||||||||||||||||    
T  14032930 tttctattgagtatctgatttattttaagatgt 14032898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9467185 - 9467131
Alignment:
Q  1 ttgctttctattgagtatttgatttattttaagatgtaacctaaaaaatatttat 55  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9467185 ttgctttctattgagtatttgatttattttaagatgtagcctaaaaaatatttat 9467131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 33443931 - 33443985
Alignment:
Q  1 ttgctttctattgagtatttgatttattttaagatgtaacctaaaaaatatttat 55  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  33443931 ttgctttctattgagtatttgatttaatttaagatgtagcctaaaaaatatttat 33443985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 33444063 - 33444114
Alignment:
Q  136 ggtcctttttcattctatgcctaaggcccctaaaatgttaggaacggccctg 187  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  33444063 ggtcctttttcattctatgtctaaggcccctaaaatgctaggaacggccctg 33444114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 9467050 - 9467002
Alignment:
Q  139 cctttttcattctatgcctaaggcccctaaaatgttaggaacggccctg 187  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||||||    
T  9467050 cctttttcattctatatctaaggcccctaaaatgctaggaacggccctg 9467002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 36641630 - 36641672
Alignment:
Q  5 tttctattgagtatttgatttattttaagatgtaacctaaaaa 47  Q
    |||||||||||||||||||||||||||||||||  ||||||||    
T  36641630 tttctattgagtatttgatttattttaagatgttgcctaaaaa 36641672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 23044519 - 23044476
Alignment:
Q  5 tttctattgagtatttgatttattttaagatgtaacctaaaaaa 48  Q
    ||||||||||||||||||||||||| |||||||  |||||||||    
T  23044519 tttctattgagtatttgatttatttgaagatgttgcctaaaaaa 23044476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 22918066 - 22918114
Alignment:
Q  5 tttctattgagtatttgatttattttaagatgtaacctaaaaaatattt 53  Q
    |||||||||||||| |||||||||| |||||||  ||||||||| ||||    
T  22918066 tttctattgagtatctgatttatttaaagatgttgcctaaaaaacattt 22918114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 66694 - 66748
Alignment:
Q  1 ttgctttctattgagtatttgatttattttaagatgtaacctaaaaaatatttat 55  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  66694 ttgctttctattgagtatttgatttattttaagatgtagcctaaaatatatttat 66748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 66832 - 66879
Alignment:
Q  140 ctttttcattctatgcctaaggcccctaaaatgttaggaacggccctg 187  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||    
T  66832 cttttttattctatgcctaaggcccctaaaatgctaggaacggccctg 66879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12700607 - 12700661
Alignment:
Q  1 ttgctttctattgagtatttgatttattttaagatgtaacctaaaaaatatttat 55  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  12700607 ttgctttctattgagtatttgatttattttaaaatgtagcctaaaaaatatttat 12700661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 2807465 - 2807427
Alignment:
Q  150 ctatgcctaaggcccctaaaatgttaggaacggccctgc 188  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  2807465 ctatgcctaagacccctaaaatgttaggagcggccctgc 2807427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 187
Target Start/End: Original strand, 40971736 - 40971782
Alignment:
Q  141 tttttcattctatgcctaaggcccctaaaatgttaggaacggccctg 187  Q
    ||||||||  |||||||||||||| ||||||| ||||||||||||||    
T  40971736 tttttcatattatgcctaaggcccgtaaaatgctaggaacggccctg 40971782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 4090364 - 4090314
Alignment:
Q  139 cctttttcattctatgcctaaggcccctaaaatgttaggaacggccctgcg 189  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  4090364 cctttttcattctatgcctaagacccctaaaatgctaggaacggccctgcg 4090314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 30358995 - 30359043
Alignment:
Q  7 tctattgagtatttgatttattttaagatgtaacctaaaaaatatttat 55  Q
    ||||| |||||||||||||||||| ||||||  ||||||||||||||||    
T  30358995 tctatggagtatttgatttattttcagatgttgcctaaaaaatatttat 30359043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 4064884 - 4064843
Alignment:
Q  5 tttctattgagtatttgatttattttaagatgtaacctaaaa 46  Q
    ||||||||||||||||||||||||||| |||||  |||||||    
T  4064884 tttctattgagtatttgatttattttacgatgttgcctaaaa 4064843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 18616994 - 18617026
Alignment:
Q  5 tttctattgagtatttgatttattttaagatgt 37  Q
    ||||||||||||||||||||| |||||||||||    
T  18616994 tttctattgagtatttgatttcttttaagatgt 18617026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 30359812 - 30359860
Alignment:
Q  7 tctattgagtatttgatttattttaagatgtaacctaaaaaatatttat 55  Q
    ||||| |||||||| ||||||||| ||||||  ||||||||||||||||    
T  30359812 tctatggagtattttatttattttcagatgttgcctaaaaaatatttat 30359860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 31474301 - 31474253
Alignment:
Q  5 tttctattgagtatttgatttattttaagatgtaacctaaaaaatattt 53  Q
    |||||||||||||| |||||||||| |||||||  ||||||||| ||||    
T  31474301 tttctattgagtatctgatttatttaaagatgttgcctaaaaaacattt 31474253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 9913368 - 9913422
Alignment:
Q  1 ttgctttctattgagtatttgatttattttaagatgtaacctaaaaaatatttat 55  Q
    |||||||| |||||||||||||||||||||| |||||| ||||||||||||||||    
T  9913368 ttgctttcaattgagtatttgatttattttaggatgtagcctaaaaaatatttat 9913422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 25471776 - 25471726
Alignment:
Q  5 tttctattgagtatttgatttattttaagatgtaacctaaaaaatatttat 55  Q
    |||||||||||||| ||||||||||||||||||  ||||||||| ||||||    
T  25471776 tttctattgagtatctgatttattttaagatgttgcctaaaaaacatttat 25471726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 43672550 - 43672518
Alignment:
Q  5 tttctattgagtatttgatttattttaagatgt 37  Q
    |||||||||||||||||||||||||||||||||    
T  43672550 tttctattgagtatttgatttattttaagatgt 43672518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 33051233 - 33051183
Alignment:
Q  5 tttctattgagtatttgatttattttaagatgtaacctaaaaaatatttat 55  Q
    |||||||||||| ||||||||||||||||||||  ||||||||| ||||||    
T  33051233 tttctattgagtgtttgatttattttaagatgttgcctaaaaaacatttat 33051183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 28945282 - 28945235
Alignment:
Q  141 tttttcattctatgcctaaggcccctaaaatgttaggaacggccctgc 188  Q
    |||||||  ||||||||||||||||| ||| |||||||||||||||||    
T  28945282 tttttcaaactatgcctaaggccccttaaacgttaggaacggccctgc 28945235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 9957548 - 9957592
Alignment:
Q  9 tattgagtatttgatttattttaagatgtaacctaaaaaatattt 53  Q
    |||||||||| ||||||||||||||||||  ||||||||| ||||    
T  9957548 tattgagtatctgatttattttaagatgttgcctaaaaaacattt 9957592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 32178288 - 32178244
Alignment:
Q  9 tattgagtatttgatttattttaagatgtaacctaaaaaatattt 53  Q
    |||||||||| ||||||||||||||||||  ||||||||| ||||    
T  32178288 tattgagtatctgatttattttaagatgttgcctaaaaaacattt 32178244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 1133 - 1189
Alignment:
Q  7 tctattgagtatttgatttattttaagatgtaacctaaaaaatatttatatgatagt 63  Q
    ||||| |||||||||||||||||| | |||| |||||||||| |||||| |||||||    
T  1133 tctatggagtatttgatttattttcatatgttacctaaaaaacatttatttgatagt 1189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University