View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5777_high_15 (Length: 241)
Name: NF5777_high_15
Description: NF5777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5777_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 44 - 202
Target Start/End: Complemental strand, 6019926 - 6019768
Alignment:
| Q |
44 |
ccaaaagaaatccatttataaagtgaattgggtgttgttcaacatgtcgtgtgttgatcttgtcgtgttgtatagcagcgctcnnnnnnnggtacattgt |
143 |
Q |
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| T |
6019926 |
ccaaaagaaatccatttataaagtgaattgggtgttgttcaacatgtcgtgtgttgatcttgtcgtgttgtatagcagcgctctttttttggtacattgt |
6019827 |
T |
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| Q |
144 |
caggttattttgcggtgcataacaagagtttgttaatttttagtataatacaatggaat |
202 |
Q |
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| T |
6019826 |
caggttattttgcggtgcataacaagagtttgtcaatttttagtataatacaatggaat |
6019768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 48583899 - 48583949
Alignment:
| Q |
46 |
aaaagaaatccatttataaagtgaattgggtgttgttcaacatgtcgtgtg |
96 |
Q |
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| T |
48583899 |
aaaagaaatccatttataaagtgaattaagtgttgttcaacatgttgtgtg |
48583949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 14526033 - 14526083
Alignment:
| Q |
46 |
aaaagaaatccatttataaagtgaattgggtgttgttcaacatgtcgtgtg |
96 |
Q |
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| T |
14526033 |
aaaagaaatccattaataaagtgaattgcgtgctgttgaacatgtcgtgtg |
14526083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 41312934 - 41312898
Alignment:
| Q |
90 |
tcgtgtgttgatcttgtcgtgttgtatagcagcgctc |
126 |
Q |
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| T |
41312934 |
tcgtgtgttgagtttgtcgtgttgtatagcagcgctc |
41312898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 41312988 - 41312948
Alignment:
| Q |
47 |
aaagaaatccatttataaagtgaattgggtgttgttcaaca |
87 |
Q |
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| T |
41312988 |
aaagaaatctattaataaagtgaattgggtgtcgttcaaca |
41312948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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