View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5777_high_17 (Length: 236)
Name: NF5777_high_17
Description: NF5777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5777_high_17 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 30219717 - 30219935
Alignment:
| Q |
1 |
ggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctggaatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30219717 |
ggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctggaatta |
30219816 |
T |
|
| Q |
101 |
gctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttcctccctatcaatccacgtttctcctctattatggttttaaatctcttct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30219817 |
gctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttccttcctatcaatccacgtttctcctctattatggttttacatctcttct |
30219916 |
T |
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| Q |
201 |
atacttatttattaattac |
219 |
Q |
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||||||||||||||||||| |
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| T |
30219917 |
atacttatttattaattac |
30219935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 30049247 - 30049061
Alignment:
| Q |
1 |
ggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctggaatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||| ||| |||||||| |
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| T |
30049247 |
ggacaaattcaatgaagaagttcaagagccagtgagtcctcatggtcaatacttcaacagctctgtgatatgttcatatgtttttgcctttttggaatta |
30049148 |
T |
|
| Q |
101 |
gctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttcctccctatcaatccacgtttctcctctattatggtt |
187 |
Q |
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| T |
30049147 |
gctattccatttgataattcattagctatacctttgctcaaagatgtcttcatccctatcaacccacgcttctcctcaattatggtt |
30049061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 30063588 - 30063402
Alignment:
| Q |
1 |
ggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctggaatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||| ||| |||||||| |
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| T |
30063588 |
ggacaaattcaatgaagaagttcaagagccagtgagtcctcatggtcaatacttcaacagctctgtgatatgttcatatgtttttgcctttttggaatta |
30063489 |
T |
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| Q |
101 |
gctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttcctccctatcaatccacgtttctcctctattatggtt |
187 |
Q |
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| T |
30063488 |
gctattccatttgataattcattagctatacctttgctcaaagatgtcttcatccctatcaacccacgcttctcctcaattatggtt |
30063402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 30033147 - 30032961
Alignment:
| Q |
1 |
ggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctggaatta |
100 |
Q |
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|||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| || |
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| T |
30033147 |
ggacaagttctatgaagaagttcaagagccagtgagtccccatggacaatatttcaacagctctgtcatatgttcatatgtttttggctttctggagttt |
30033048 |
T |
|
| Q |
101 |
gctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttcctccctatcaatccacgtttctcctctattatggtt |
187 |
Q |
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| T |
30033047 |
gctattccatttgataactcactggttatacctttgctcaaagatgtcttcatccctatcaacccacgcttctcctcaattatggtt |
30032961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 30229358 - 30229172
Alignment:
| Q |
1 |
ggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctggaatta |
100 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
30229358 |
ggacaaattctttggagaagttcaagagccagtgagtcctcatggacaatatttcaacagctctgtgatgtgttcatatgtttttggctttctggaatta |
30229259 |
T |
|
| Q |
101 |
gctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttcctccctatcaatccacgtttctcctctattatggtt |
187 |
Q |
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|| |||||| ||||| | ||| | |||| |||||||| |||||||| ||| |||||||||| ||||| ||||||||||| |||||| |
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| T |
30229258 |
gcgattccatttgataattcattagctatacctttgctcaaagatgttttcatccctatcaacccacgcttctcctctatcatggtt |
30229172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 177
Target Start/End: Complemental strand, 30264932 - 30264781
Alignment:
| Q |
26 |
gagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctggaattagctattccaattgatgactcacaaa |
125 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| | | || ||||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||| |
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| T |
30264932 |
gagccagtaagtccaagtggacaatatttcaacacccctcccctatgttcatatgtttttggatttttggaattagaaattccaattgatgactctcaag |
30264833 |
T |
|
| Q |
126 |
ctatgcctttgcttaaagatgtcttcctccctatcaatccacgtttctcctc |
177 |
Q |
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||||| |||| | || || | ||| | |||||||||||||| |||||||| |
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| T |
30264832 |
ctatgtatttgatccaacatttgttcttacctatcaatccacgcttctcctc |
30264781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 30287256 - 30287407
Alignment:
| Q |
26 |
gagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctggaattagctattccaattgatgactcacaaa |
125 |
Q |
| |
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|||||||| |||||| ||||||||||||||| | | || ||||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||| |
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| T |
30287256 |
gagccagtaagtccaagtggacaatatttcaacacccctcccctatgttcatatgtttttggatttttggaattagaaattccaattgatgactctcaag |
30287355 |
T |
|
| Q |
126 |
ctatgcctttgcttaaagatgtcttcctccctatcaatccacgtttctcctc |
177 |
Q |
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||||| |||| | || || | ||| | |||||||||||||| |||||||| |
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| T |
30287356 |
ctatgtatttgatccaacatttgttcttacctatcaatccacgcttctcctc |
30287407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 69 - 186
Target Start/End: Complemental strand, 30271814 - 30271697
Alignment:
| Q |
69 |
tatgttcatatgtttttgggtttctggaattagctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttcctccctatcaatccacg |
168 |
Q |
| |
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|||||||||||||||| || ||| |||||| | |||||||||||||| || ||||||||| |||| | || |||||||| | |||||||||||||| |
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| T |
30271814 |
tatgttcatatgttttcggatttttggaatcacaaattccaattgatgattctcaaactatgtatttgttccaacatgtcttcttacctatcaatccacg |
30271715 |
T |
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| Q |
169 |
tttctcctctattatggt |
186 |
Q |
| |
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||||||||| || ||||| |
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| T |
30271714 |
tttctcctccataatggt |
30271697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 13768 - 13845
Alignment:
| Q |
40 |
acatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctggaattagctattccaattgatga |
117 |
Q |
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|||||||||||||||||| |||||||| |||||| ||| ||||||||| ||||||||||||||||| |||||| |||| |
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| T |
13768 |
acatggacaatatttcaacagctctgtaatatgtgcatttgtttttggctttctggaattagctataccaatttatga |
13845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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