View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5777_high_2 (Length: 502)
Name: NF5777_high_2
Description: NF5777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5777_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 5254513 - 5254199
Alignment:
| Q |
19 |
agatcagttataggcattgcaactgctgcaaaacaagtaaacgacccctcccattcccatnnnnnnn-gtgtgcgacaaaga--acaaaatattcttctg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
5254513 |
agatcagttataggcattgcaactgctgcaaaacaagtaaacgacccctcccattcccataaaaaaaagtgtgcgacaaagagaacaaaatattcttctg |
5254414 |
T |
|
| Q |
116 |
gttcagaccacaaagtgcaattcattgtcaacttacaaaggatgcactgtgtcatactgtgttatggtcgttaatatattgaagatagttactcttgtgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5254413 |
gttcagaccacaaagtgcaattcattgtcaacttacaatggatgcactgtgtcatattgtgttatggtcgttaatatattgaagatagttactcttgtgg |
5254314 |
T |
|
| Q |
216 |
tatcaaatacataaataacataaacaaattcttttgtgattttttaaaattaatagataaaatttcaggacataattatacaaatacatgaggaaagctt |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5254313 |
tatc----acataaataacataaacaaattc--ttgtgattttttaaaattaatagataaaatttcaggacataattatacaaatacatgaggaaagctt |
5254220 |
T |
|
| Q |
316 |
aagctagaacatttgatattt |
336 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
5254219 |
aagctagaacatttgatattt |
5254199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 409 - 489
Target Start/End: Complemental strand, 5254126 - 5254046
Alignment:
| Q |
409 |
ccatactacaaacttcattaggagattacgtggatgtcatcttgacttaccccacaacccaatccttcagaagccttctga |
489 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5254126 |
ccatactacaaacttcattaagagattacgtggatgtcatcttgacttaccccacgacccaatccttcagaagccttctga |
5254046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 5179831 - 5179772
Alignment:
| Q |
19 |
agatcagttataggcattgcaactgctgcaaaacaagtaaacgacccctcccattcccat |
78 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
5179831 |
agatcagttataaacattgcaactgctgcaaaacaagtaaatgacacctcccattcccat |
5179772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 5281590 - 5281531
Alignment:
| Q |
19 |
agatcagttataggcattgcaactgctgcaaaacaagtaaacgacccctcccattcccat |
78 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
5281590 |
agatcagttataaacattgcaactgctgcaaaacaagtaaatgacacctcccattcccat |
5281531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University