View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5777_high_9 (Length: 332)

Name: NF5777_high_9
Description: NF5777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5777_high_9
NF5777_high_9
[»] chr6 (15 HSPs)
chr6 (1-331)||(5253715-5254045)
chr6 (60-332)||(5065291-5065563)
chr6 (60-332)||(5126468-5126743)
chr6 (219-322)||(5177930-5178033)
chr6 (219-322)||(5279755-5279858)
chr6 (219-322)||(5688904-5689007)
chr6 (219-320)||(5242513-5242614)
chr6 (219-332)||(5346210-5346323)
chr6 (222-308)||(5100822-5100908)
chr6 (222-308)||(5135923-5136009)
chr6 (219-322)||(5098402-5098505)
chr6 (119-172)||(5178146-5178199)
chr6 (219-332)||(5427081-5427194)
chr6 (60-167)||(5126396-5126500)
chr6 (245-307)||(5124470-5124532)
[»] chr7 (1 HSPs)
chr7 (219-332)||(36212922-36213035)
[»] chr4 (5 HSPs)
chr4 (221-332)||(4337083-4337194)
chr4 (219-289)||(4122645-4122715)
chr4 (201-332)||(4132601-4132729)
chr4 (219-286)||(4319303-4319370)
chr4 (263-331)||(25569022-25569090)
[»] chr3 (4 HSPs)
chr3 (219-332)||(47985394-47985507)
chr3 (219-332)||(48003968-48004081)
chr3 (219-332)||(47994681-47994794)
chr3 (219-332)||(48013253-48013366)
[»] scaffold1476 (1 HSPs)
scaffold1476 (249-308)||(47-106)
[»] chr2 (1 HSPs)
chr2 (249-308)||(22583333-22583392)


Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 5254045 - 5253715
Alignment:
Q  1 gaatgtccgtccttctgttatctgttaagtcatccatgggcgccactttaggagagaccaagcattcattttcttcatcactacaaacaattggttgatt 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5254045 gaatgtccgtccttctgttatctgttaagtcatccaagggcgccactttaggagagaccaagcattcattttcttcatcactacaaacaattggttgatt 5253946  T
Q  101 cttatattgtgcattagaagagacacttctaacaaaacattcattttcataaccactactaacaataacattcgtatcttgtccatgacactcctccgcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5253945 cttatattgtgcattagaagagacacttctaacaaaacattcattttcataaccactactaacaataacattcatatcttgtccatgacactcctccgcc 5253846  T
Q  201 ttttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggtt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5253845 ttttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggtt 5253746  T
Q  301 caatacttaataatactctctgctcctcctc 331  Q
    ||||||||||||||||||| ||| |||||||    
T  5253745 caatacttaataatactctttgcccctcctc 5253715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 60 - 332
Target Start/End: Original strand, 5065291 - 5065563
Alignment:
Q  60 aagcattcattttcttcatcactacaaacaattggttgattcttatattgtgcattagaagaga-cacttctaacaaaacattcattttcataaccacta 158  Q
    |||||||||||||||||| ||||||||||||||| ||  ||||||| |||||||| |||||||| | |  |||  ||| ||||||||||||| ||| |||    
T  5065291 aagcattcattttcttcaccactacaaacaattgattcgttcttatgttgtgcatgagaagagatctcgcctag-aaagcattcattttcatcaccgcta 5065389  T
Q  159 ctaacaataacattcgtatcttgtccatgacactcctccgccttttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaatgaaac 258  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||||||||||| || || |||||||||||||||||||| ||||||||||||| |||||    
T  5065390 ctaacaataacattcttatcttgtgcatgacactcctcccccttttcagcaattggttcatcatatatgagataaactgttgtcctcttcacaacgaaac 5065489  T
Q  259 tgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactctctgctcctcctca 332  Q
     ||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  5065490 cgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatactactctctgcccctcctca 5065563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 332
Target Start/End: Original strand, 5126468 - 5126743
Alignment:
Q  60 aagcattcattttcttcatcactacaaacaattggttgattcttatattgtgcattagaagagacacttctaacaaaacattcattttcataaccactac 159  Q
    |||| |||||||||||||||||||| |||||| ||||||||||| | || ||||| |||||||||   |||  |||| | |||| ||| || ||||||||    
T  5126468 aagccttcattttcttcatcactactaacaataggttgattcttttcttctgcatgagaagagacctctctttcaaagctttcagttttatcaccactac 5126567  T
Q  160 taacaataacattcgtatctt---gtccatgacactcctccgccttttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaatgaa 256  Q
     |||| |||||||| ||| |    || ||||||| | || |    ||||| |||| || || ||||||||||||||||| |  ||| |||||||||||||    
T  5126568 aaacattaacattcttatatgtccgtgcatgacattgcttcatagtttcaccaattggttcatcatatatgagataaacagctgtcttcttcacaatgaa 5126667  T
Q  257 actgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactctctgctcctcctca 332  Q
    || ||||| ||||||| |||||| ||| ||||| || |||| ||| |||||| ||| |||||||| | ||||||||    
T  5126668 accgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatactactctctccccctcctca 5126743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 219 - 322
Target Start/End: Complemental strand, 5178033 - 5177930
Alignment:
Q  219 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 318  Q
    ||||||| |||||||||||| ||  ||||||||||||||| ||||||||||||| |||||| ||||||||| || | |||||| |||||| ||| |||||    
T  5178033 tcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactactc 5177934  T
Q  319 tctg 322  Q
    ||||    
T  5177933 tctg 5177930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 219 - 322
Target Start/End: Complemental strand, 5279858 - 5279755
Alignment:
Q  219 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 318  Q
    ||||||| |||||||||||| ||  ||||||||||||||| ||||||||||||| |||||| ||||||||| || | |||||| |||||| ||| |||||    
T  5279858 tcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactactc 5279759  T
Q  319 tctg 322  Q
    ||||    
T  5279758 tctg 5279755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 322
Target Start/End: Original strand, 5688904 - 5689007
Alignment:
Q  219 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 318  Q
    ||||||| |||||||||||| ||  ||||||||||||||| |||||||||||||  ||||| ||||||||| || | |||||| |||||| ||| |||||    
T  5688904 tcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactc 5689003  T
Q  319 tctg 322  Q
    ||||    
T  5689004 tctg 5689007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 320
Target Start/End: Original strand, 5242513 - 5242614
Alignment:
Q  219 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 318  Q
    ||||||| ||||||||||   ||| |||||||||||||||||||||||||||||  ||| | ||||||||| || |||||||| |||||| ||| |||||    
T  5242513 tcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttcatactactc 5242612  T
Q  319 tc 320  Q
    ||    
T  5242613 tc 5242614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 332
Target Start/End: Complemental strand, 5346323 - 5346210
Alignment:
Q  219 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 318  Q
    |||||||||||||||| ||  ||| |||||||||||||||  ||||||| |||| | |||| ||||||||| || |||||||| |||||| |||  ||||    
T  5346323 tcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaactc 5346224  T
Q  319 tctgctcctcctca 332  Q
    ||||  ||||||||    
T  5346223 tctggccctcctca 5346210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 308
Target Start/End: Original strand, 5100822 - 5100908
Alignment:
Q  222 tatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatactt 308  Q
    |||| |||||||||||  ||| | ||||||||||||||||||||||||||| |||| | ||||||||| || || ||||| ||||||    
T  5100822 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatactt 5100908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 308
Target Start/End: Original strand, 5135923 - 5136009
Alignment:
Q  222 tatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatactt 308  Q
    |||| |||||||||||  ||| | ||||||||||||||||||||||||||| |||| | ||||||||| || || ||||| ||||||    
T  5135923 tatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatactt 5136009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 322
Target Start/End: Complemental strand, 5098505 - 5098402
Alignment:
Q  219 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 318  Q
    |||||||  ||||||||||  ||| | |||||||||||||||||||| |||||| |||  | ||||||||| || |||||||| |||||| ||| ||| |    
T  5098505 tcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatgacctccactttgttaccaggttctatacttgatattaccc 5098406  T
Q  319 tctg 322  Q
    ||||    
T  5098405 tctg 5098402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 5178199 - 5178146
Alignment:
Q  119 agagacacttctaacaaaacattcattttcataaccactactaacaataacatt 172  Q
    ||||||| |||| |||| |||||||||||||| ||||||||||||||| |||||    
T  5178199 agagacatttctgacaacacattcattttcatcaccactactaacaatgacatt 5178146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 332
Target Start/End: Complemental strand, 5427194 - 5427081
Alignment:
Q  219 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 318  Q
    ||||||| ||||||||||   ||| || |||||| |||||||||||||||||||  ||| | ||||| ||| || |||||||| |||||| ||| |||||    
T  5427194 tcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttgatactactc 5427095  T
Q  319 tctgctcctcctca 332  Q
    | | | ||||||||    
T  5427094 tttccccctcctca 5427081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 167
Target Start/End: Original strand, 5126396 - 5126500
Alignment:
Q  60 aagcattcattttcttcatcactacaaacaattggttgattcttatattgtgcattagaagagacacttctaacaaaacattcattttcataaccactac 159  Q
    |||| ||| ||||||||| |||||||||||||||||| |||||||| ||| |||  || | |||| ||||| ||||| | ||||||||| | | ||||||    
T  5126396 aagccttccttttcttcagcactacaaacaattggttcattcttatcttgcgca--ag-atagacccttctgacaaagccttcattttcttcatcactac 5126492  T
Q  160 taacaata 167  Q
    ||||||||    
T  5126493 taacaata 5126500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 5124470 - 5124532
Alignment:
Q  245 cttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatact 307  Q
    |||||||||||| | ||||| |||||||  |||||| ||||||||||| |||||||| |||||    
T  5124470 cttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatact 5124532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 332
Target Start/End: Original strand, 36212922 - 36213035
Alignment:
Q  219 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 318  Q
    ||||| ||||||||||  |  ||| |||||||||||||| |||||||||||||| |||||| ||||| |||||  |||||||| |||||| ||| || ||    
T  36212922 tcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatactaatc 36213021  T
Q  319 tctgctcctcctca 332  Q
    ||||| ||||||||    
T  36213022 tctgcccctcctca 36213035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 332
Target Start/End: Complemental strand, 4337194 - 4337083
Alignment:
Q  221 atatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactctc 320  Q
    |||||||||||||||||| |||||| |||||||  |||||||| |||||||| |||||| ||| |||||||  |||||||| ||| || |||  ||||||    
T  4337194 atatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgataccactctc 4337095  T
Q  321 tgctcctcctca 332  Q
    |||  |||||||    
T  4337094 tgccactcctca 4337083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 4122645 - 4122715
Alignment:
Q  219 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccacttt 289  Q
    |||||||||||||||||||  ||| || ||||||||||||||||  |||||||| |||||| |||||||||    
T  4122645 tcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccacttt 4122715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 332
Target Start/End: Original strand, 4132601 - 4132729
Alignment:
Q  201 ttttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggtt 300  Q
    |||||| |||| || || |||||||||||||||||||  ||| || ||||||||||||||||| ||||||   |||||| ||| ||||| |  |||||||    
T  4132601 ttttcaccaattggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaa---caacaatctcgactttgtcaccaggtt 4132697  T
Q  301 caatacttaataatactctctgctcctcctca 332  Q
    | ||| || ||| ||||||||||  |||||||    
T  4132698 ccatatttgatactactctctgccactcctca 4132729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 4319303 - 4319370
Alignment:
Q  219 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccac 286  Q
    |||||||||||||||||||  ||| || ||||||||||||||||| |||||||  |||||| ||||||    
T  4319303 tcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccac 4319370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 331
Target Start/End: Complemental strand, 25569090 - 25569022
Alignment:
Q  263 ctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactctctgctcctcctc 331  Q
    ||||||||||  ||||| ||||||||| ||||||||||| |||||| ||| |||| | ||| |||||||    
T  25569090 ctcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactactatatgcccctcctc 25569022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 332
Target Start/End: Original strand, 47985394 - 47985507
Alignment:
Q  219 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 318  Q
    |||||||  ||||||||||   ||||||||||||||||||  |||||||||||| |||| | ||||||||| || || ||||| |||||| ||| |||||    
T  47985394 tcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactc 47985493  T
Q  319 tctgctcctcctca 332  Q
    ||| | ||||||||    
T  47985494 tctccccctcctca 47985507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 332
Target Start/End: Original strand, 48003968 - 48004081
Alignment:
Q  219 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 318  Q
    |||||||  ||||||||||   ||||||||||||||||||  |||||||||||| |||| | ||||||||| || || ||||| |||||| ||| |||||    
T  48003968 tcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactc 48004067  T
Q  319 tctgctcctcctca 332  Q
    ||| | ||||||||    
T  48004068 tctccccctcctca 48004081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 332
Target Start/End: Original strand, 47994681 - 47994794
Alignment:
Q  219 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 318  Q
    |||||||  ||||||||||   ||||||||||||||||||  |||||||||||| |||| | ||||||||| || || | ||| |||||| ||| |||||    
T  47994681 tcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactactc 47994780  T
Q  319 tctgctcctcctca 332  Q
    ||| | ||||||||    
T  47994781 tctccccctcctca 47994794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 332
Target Start/End: Original strand, 48013253 - 48013366
Alignment:
Q  219 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatacttaataatactc 318  Q
    |||||||  ||||||||||   ||||||||||||||||||  |||||||||||| |||| | ||||||||| || || | ||| |||||| ||| |||||    
T  48013253 tcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactactc 48013352  T
Q  319 tctgctcctcctca 332  Q
    ||| | ||||||||    
T  48013353 tctccccctcctca 48013366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1476 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 106 - 47
Alignment:
Q  249 acaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatactt 308  Q
    ||||||||| |||||||| ||||| || ||| |||||||||||| |||||||| ||||||    
T  106 acaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctatactt 47  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 22583333 - 22583392
Alignment:
Q  249 acaatgaaactgttctcaaaaacatcaacaaactccactttatttccaggttcaatactt 308  Q
    ||||||||| |||||||| ||||| || ||| |||||||||||| |||||||| ||||||    
T  22583333 acaatgaaattgttctcataaacaacagcaacctccactttattaccaggttctatactt 22583392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University