View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5777_low_10 (Length: 325)

Name: NF5777_low_10
Description: NF5777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5777_low_10
NF5777_low_10
[»] chr4 (5 HSPs)
chr4 (1-320)||(6019058-6019377)
chr4 (1-115)||(16422337-16422451)
chr4 (1-114)||(44203602-44203718)
chr4 (2-66)||(41389294-41389358)
chr4 (1-66)||(41389181-41389248)
[»] chr5 (3 HSPs)
chr5 (4-115)||(408245-408356)
chr5 (1-66)||(41485065-41485130)
chr5 (135-201)||(408379-408445)
[»] chr6 (4 HSPs)
chr6 (1-116)||(18849571-18849686)
chr6 (1-115)||(16358754-16358867)
chr6 (1-84)||(26045833-26045917)
chr6 (1-84)||(26141533-26141617)
[»] scaffold0215 (1 HSPs)
scaffold0215 (1-115)||(24761-24875)
[»] chr8 (2 HSPs)
chr8 (1-115)||(3372107-3372221)
chr8 (41-115)||(9035580-9035654)
[»] scaffold0025 (1 HSPs)
scaffold0025 (6-114)||(36914-37022)
[»] chr3 (1 HSPs)
chr3 (1-122)||(4477389-4477509)
[»] chr2 (2 HSPs)
chr2 (1-76)||(41454899-41454974)
chr2 (1-84)||(13693723-13693806)
[»] chr1 (1 HSPs)
chr1 (1-115)||(35812107-35812221)
[»] chr7 (2 HSPs)
chr7 (1-66)||(33164297-33164365)
chr7 (1-122)||(28195324-28195444)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 6019377 - 6019058
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019377 ccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatg 6019278  T
Q  101 attttattgacgtacttgtaccnnnnnnnnaatgttgtcgtattctggaaccagtactcgtatcgtaccagataccatacccgttcctatgcatcatagt 200  Q
    ||||||||||||||||||||||        |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019277 attttattgacgtacttgtaccttttttttaatgttgtcgtattttggaaccagtactcgtatcgtaccagataccatacccgttcctatgcatcatagt 6019178  T
Q  201 tgcaaactttcaagtgacattttacctgatattgacaattgcttcgttttggatctaagctataaaatagaaaattagtgacgacgaagaaactaattta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6019177 tgcaaactttcaagtgacattttacctgatattgacaattgcttcgttttggatctaagctataaaatagaaaattagtgacgacgaagaaactaattta 6019078  T
Q  301 ccatatagctcatatctctg 320  Q
    ||||||||||||||||||||    
T  6019077 ccatatagctcatatctctg 6019058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 16422451 - 16422337
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatg 100  Q
    |||||||||||||| ||||||||||| ||||  |||||| |||||| || |||| ||||||||||| ||||||||||| ||||| ||||||||| || ||    
T  16422451 ccaactctaaattttgactttttaaacttctattgtgatttttttgctgcgaatcgaagaatttaactctttcatgttatattctataacaaaacttctg 16422352  T
Q  101 attttattgacgtac 115  Q
    |||||| | ||||||    
T  16422351 attttactaacgtac 16422337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 44203718 - 44203602
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtatt---ccataacaaaattt 97  Q
    ||||||||||||||| ||||||| ||||| |  |||| | |||||||||| | ||||||||||||  |||| |||||| ||||     ||||||||| ||    
T  44203718 ccaactctaaatttcaacttttttaatttttattgtgctgtttttgttgtcagttgaagaatttatctcttccatgttatattatagtataacaaaactt 44203619  T
Q  98 atgattttattgacgta 114  Q
    |||||||||||||||||    
T  44203618 atgattttattgacgta 44203602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 41389358 - 41389294
Alignment:
Q  2 caactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaa 66  Q
    ||||| ||| |||||||||||||||||||| |  |||  ||||||||||||||| ||||||||||    
T  41389358 caactataagtttcgactttttaaatttctaacctgaattttttgttgtgaattaaagaatttaa 41389294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41389248 - 41389181
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtga--tatttttgttgtgaattgaagaatttaa 66  Q
    |||||||| | |||||||||||||||||| |  |||||  | ||||| ||||||||||||||||||||    
T  41389248 ccaactcttagtttcgactttttaaatttttattgtgagtttttttttttgtgaattgaagaatttaa 41389181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 408245 - 408356
Alignment:
Q  4 actctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatgatt 103  Q
    ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||    
T  408245 actctaaatttggactttttaaacttctgatgtgatttttttgttgtgaattgaagaatttaattctttcatgttatattctataacaaaacttatgatt 408344  T
Q  104 ttattgacgtac 115  Q
    ||||||||||||    
T  408345 ttattgacgtac 408356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41485130 - 41485065
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaa 66  Q
    |||||| ||||||| |||||| |||| ||||  |||||| ||||||| ||||||||||||||||||    
T  41485130 ccaactttaaattttgactttgtaaacttctattgtgatttttttgtcgtgaattgaagaatttaa 41485065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 408379 - 408445
Alignment:
Q  135 ttgtcgtattctggaaccagtactcgtatcgtaccagataccatacccgttcctatgcatcatagtt 201  Q
    ||| |||||||| | ||||||||  |||||||||||| |||| ||||||| |||||||| |||||||    
T  408379 ttgccgtattctcgtaccagtacctgtatcgtaccaggtaccgtacccgtgcctatgcaacatagtt 408445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 18849571 - 18849686
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatg 100  Q
    ||||||||||||||||| |||||||| |||| ||||||| || ||||| ||||||||||||||||| || |||||||| ||||| || |||||| |||||    
T  18849571 ccaactctaaatttcgaatttttaaacttctaatgtgattttcttgttatgaattgaagaatttaactccttcatgttatattctatgacaaaacttatg 18849670  T
Q  101 attttattgacgtact 116  Q
    ||||||||||||||||    
T  18849671 attttattgacgtact 18849686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 16358867 - 16358754
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatg 100  Q
    |||||||||||||||||||||||||| |||| ||||||| || || || ||||||||||||||||| || |||||||| ||||| ||||||||| |||||    
T  16358867 ccaactctaaatttcgactttttaaacttctaatgtgattttctt-ttatgaattgaagaatttaactccttcatgttatattctataacaaaacttatg 16358769  T
Q  101 attttattgacgtac 115  Q
    |||||||||||||||    
T  16358768 attttattgacgtac 16358754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 26045917 - 26045833
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtgatatt-tttgttgtgaattgaagaatttaaatctttcatgttgtattc 84  Q
    |||||||||||||| ||||||||||| |||| |||| || || ||| || | ||||||||||||||| |||| |||||| |||||    
T  26045917 ccaactctaaattttgactttttaaacttctaatgtcattttattttttataaattgaagaatttaactcttccatgttatattc 26045833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 26141617 - 26141533
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtgatatt-tttgttgtgaattgaagaatttaaatctttcatgttgtattc 84  Q
    |||||||||||||| ||||||||||| |||| |||| || || ||| || | ||||||||||||||| |||| |||||| |||||    
T  26141617 ccaactctaaattttgactttttaaacttctaatgtcattttattttttataaattgaagaatttaactcttccatgttatattc 26141533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0215 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 24875 - 24761
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatg 100  Q
    ||||||||||||||||| |||||||| |||| ||||||| || ||||| ||||||||||||||||| || |||||||| ||||| || |||||| |||||    
T  24875 ccaactctaaatttcgaatttttaaacttctaatgtgattttcttgttatgaattgaagaatttaactccttcatgttatattctatgacaaaacttatg 24776  T
Q  101 attttattgacgtac 115  Q
    |||||||||||||||    
T  24775 attttattgacgtac 24761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 3372221 - 3372107
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatg 100  Q
    ||||||||||||||||| |||||||| |||| ||||||| || ||||| ||||||||||||||||| || |||||||| ||||| || |||||| |||||    
T  3372221 ccaactctaaatttcgaatttttaaacttctaatgtgattttcttgttatgaattgaagaatttaactccttcatgttatattctatgacaaaacttatg 3372122  T
Q  101 attttattgacgtac 115  Q
    |||||||||||||||    
T  3372121 attttattgacgtac 3372107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 9035580 - 9035654
Alignment:
Q  41 tttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatgattttattgacgtac 115  Q
    ||||||||| |||||||||||||||| ||||||||||| | ||| | ||||||||||||||||||||||||||||    
T  9035580 tttttgttgggaattgaagaatttaactctttcatgttattttctaaaacaaaatttatgattttattgacgtac 9035654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 36914 - 37022
Alignment:
Q  6 tctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatgatttt 105  Q
    |||||||||| |||||||||| |  | |||||||  ||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||||    
T  36914 tctaaatttcaactttttaaactattaatgtgattattttgttgtgaattgaagaatttaactctttcatgttatattctataacaaaacttatgatttt 37013  T
Q  106 attgacgta 114  Q
    |||||||||    
T  37014 attgacgta 37022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 4477509 - 4477389
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatg 100  Q
    |||||||||  |||| |||||||||| |||| ||||||| ||||| |||||||| ||||||||||| | ||||||||| ||||| ||||||||| ||||     
T  4477509 ccaactctatgtttcaactttttaaacttctaatgtgat-tttttattgtgaatcgaagaatttaactttttcatgttatattctataacaaaacttata 4477411  T
Q  101 attttattgacgtacttgtacc 122  Q
    ||||||||||||||| ||||||    
T  4477410 attttattgacgtacatgtacc 4477389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 41454899 - 41454974
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatg 76  Q
    |||||||||||||||||||||||||| ||||  |||||| |||||||||||||| ||||||||||| |||||||||    
T  41454899 ccaactctaaatttcgactttttaaacttctattgtgatttttttgttgtgaatcgaagaatttaactctttcatg 41454974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 13693806 - 13693723
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattc 84  Q
    |||||||||||||| ||||||||||  ||||  |||||| |  |||||| ||||||||| |||||| || |||||||| |||||    
T  13693806 ccaactctaaattttgactttttaatcttctattgtgatttccttgttgggaattgaagcatttaactcattcatgttatattc 13693723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 35812221 - 35812107
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtgatatttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttatg 100  Q
    |||||||||  ||||||||||||||| || |   || ||||||||||||| |||||||||||| |  ||| ||||||| ||||  ||||||||| | |||    
T  35812221 ccaactctagttttcgactttttaaacttttatcgtaatatttttgttgtaaattgaagaattcagctctctcatgttatattatataacaaaactcatg 35812122  T
Q  101 attttattgacgtac 115  Q
    |||||||||||||||    
T  35812121 attttattgacgtac 35812107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33164365 - 33164297
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtga---tatttttgttgtgaattgaagaatttaa 66  Q
    |||||||||||||||||||||||||| |||| ||||||   | ||||||||||| || |||||||||||    
T  33164365 ccaactctaaatttcgactttttaaacttctaatgtgattttttttttgttgtggatagaagaatttaa 33164297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 28195324 - 28195444
Alignment:
Q  1 ccaactctaaatttcgactttttaaatttctgatgtgat-atttttgttgtgaattgaagaatttaaatctttcatgttgtattccataacaaaatttat 99  Q
    |||||||||| ||||||||||||||| ||||  ||||||  |||||||||  | ||||||||||||  ||  ||||||| ||||  ||||||||| | ||    
T  28195324 ccaactctaattttcgactttttaaacttctattgtgatgttttttgttgaaagttgaagaatttaggtc--tcatgttatattatataacaaaactcat 28195421  T
Q  100 gattttattgacgtacttgtacc 122  Q
    |||||| |||||| || ||||||    
T  28195422 gattttcttgacgcacctgtacc 28195444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University