View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5777_low_11 (Length: 321)
Name: NF5777_low_11
Description: NF5777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5777_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 36 - 242
Target Start/End: Complemental strand, 18525488 - 18525281
Alignment:
| Q |
36 |
ttcactatcagatcaacctttaacttagttctgtcagctgcctcaatttctgacaatgcttcaaatctttctgctaactcatcaatcaccgacttctcca |
135 |
Q |
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| T |
18525488 |
ttcactatcagatcaacctttaacttagttctgtcaggtgcctcaatttctgacaatgcttcaaatctttctactaactcatcaatcactgacttctcca |
18525389 |
T |
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| Q |
136 |
tccttaaatcatttgatgttagaattaatccctcaaatcaaactatcagtaaagaggttcgttggtcccctccaattcttgattgtaat-aatacaacac |
234 |
Q |
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|||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
18525388 |
tccttaaatcatttgatgttagaattaatctctcaaagccaactatcagtaaagaggttcgttggtcccctccaattcttgattgtattaaatacaacac |
18525289 |
T |
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| Q |
235 |
tgatggag |
242 |
Q |
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|||||||| |
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| T |
18525288 |
tgatggag |
18525281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 18524972 - 18524909
Alignment:
| Q |
240 |
gagaaggaaaccattttgcatatcaactggctaactttggtctcttcataccttcttacacttg |
303 |
Q |
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| T |
18524972 |
gagaaggaaaccattttgcagatcaacttgctaactttggtctctccataccttcttacacttg |
18524909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 38360212 - 38360273
Alignment:
| Q |
105 |
tctgctaactcatcaatcaccgacttctccatccttaaatcatttgatgttagaattaatcc |
166 |
Q |
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|||||||| ||||||||||| ||||| || |||||||||| ||||| |||||||||||||| |
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| T |
38360212 |
tctgctaattcatcaatcacagacttttctatccttaaattctttgaagttagaattaatcc |
38360273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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