View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5777_low_16 (Length: 239)
Name: NF5777_low_16
Description: NF5777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5777_low_16 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 31856992 - 31857214
Alignment:
| Q |
17 |
agtcttcaaaacagcttttccaagaggatttgcatgggaagtgattaaagtttatacaggaccacctgaaattgctttcaagtttaggcattggggattt |
116 |
Q |
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| T |
31856992 |
agtcttcaaatcagcttttccaagaggatttgcatgggaaatcattaaagtttatacaggaccacctgaaattgctttcaagtttaggcattggggattt |
31857091 |
T |
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| Q |
117 |
tttgaaggtccatttaagggacatgcccctactggaaagatagtccaattctctggcttgggaactctcaaggtatgtttcgaatattatttattttatg |
216 |
Q |
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| T |
31857092 |
tttgaaggtccatttaagggacatgcccctactggaaagatggtccaattctctggcttgggaactctcaaggtatgtttctaattttattatttttatg |
31857191 |
T |
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| Q |
217 |
atttgaatttaaaggtttgacat |
239 |
Q |
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| T |
31857192 |
atctgaatttaaatgtttgacat |
31857214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 31816458 - 31816283
Alignment:
| Q |
17 |
agtcttcaaaacagcttttccaagaggatttgcatgggaagtgattaaagtttatacaggaccacctgaaattgctttcaagtttaggcattggggattt |
116 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31816458 |
agtcttcaaatcagcttttccaagaggatttgcatgggaagtgattaaagtttatacaggaccacctgaaattgctttcaagtttaggcattggggattt |
31816359 |
T |
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| Q |
117 |
tttgaaggtccatttaagggacatgcccctactggaaagatagtccaattctctggcttgggaactctcaaggtat |
192 |
Q |
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| T |
31816358 |
tttgagggtccttttaagggacattcccctaccggaaagatggtccaattctttggtctaggaactctcaaggtat |
31816283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 28 - 192
Target Start/End: Original strand, 20096570 - 20096734
Alignment:
| Q |
28 |
cagcttttccaagaggatttgcatgggaagtgattaaagtttatacaggaccacctgaaattgctttcaagtttaggcattggggattttttgaaggtcc |
127 |
Q |
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|||| |||||||| ||||||||||||||||| || |||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20096570 |
cagcatttccaaggggatttgcatgggaagtcatcaaagtttacggtggaccccctgagattgcttacaagtttaggcattggggattttttgaaggtcc |
20096669 |
T |
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| Q |
128 |
atttaagggacatgcccctactggaaagatagtccaattctctggcttgggaactctcaaggtat |
192 |
Q |
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| T |
20096670 |
ttataagggacatgcacccactggaaacatggttgaattctatggctttggaactcttaaggtat |
20096734 |
T |
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