View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5777_low_18 (Length: 234)
Name: NF5777_low_18
Description: NF5777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5777_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 36030696 - 36030801
Alignment:
| Q |
118 |
acactcgcttagcaaatggatgtttcttcaaaggaacataactaa-caaatcatccataaggttattcaaccaccataaatttgctaagcaaaatgttgc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36030696 |
acactcgcttagcaaatggatgtttcttcaaaggaacataactaaacaaatcatccataaggttattcaaccaccataaatttgctaagcaaaatgttgc |
36030795 |
T |
|
| Q |
217 |
tccctt |
222 |
Q |
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|||||| |
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| T |
36030796 |
tccctt |
36030801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 36030398 - 36030517
Alignment:
| Q |
1 |
cttctataaggaatgatcagattcttcatcggtaaggtcttcccaaaactttggcagaatggnnnnnnnnnnaagacattggctgaatggttttaaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36030398 |
cttctataaggaatgatcagattcttcatcggtaaggtcttcccaaaactttggcagaatggttttttttttaagacattggctgaatggttttaaaaca |
36030497 |
T |
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| Q |
101 |
caaattatgcataaattaca |
120 |
Q |
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|||||||||||||||||||| |
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| T |
36030498 |
caaattatgcataaattaca |
36030517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 45119774 - 45119833
Alignment:
| Q |
2 |
ttctataaggaatgatcagattcttcatcggtaaggtcttcccaaaactttggcagaatg |
61 |
Q |
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|||| |||||||| ||||||||||||||| | ||||||| ||||| |||||||||||||| |
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| T |
45119774 |
ttctctaaggaattatcagattcttcatcagcaaggtctccccaagactttggcagaatg |
45119833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 15340257 - 15340202
Alignment:
| Q |
1 |
cttctataaggaatgatcagattcttcatcggtaaggtcttcccaaaactttggca |
56 |
Q |
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||||| ||||||||||||| ||||||||| | ||||||| ||||||||||||||| |
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| T |
15340257 |
cttctctaaggaatgatcaatttcttcatcagcaaggtctccccaaaactttggca |
15340202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 45348234 - 45348175
Alignment:
| Q |
2 |
ttctataaggaatgatcagattcttcatcggtaaggtcttcccaaaactttggcagaatg |
61 |
Q |
| |
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|||| |||||||| ||||||||||||||| | ||||||| | ||| |||||||||||||| |
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| T |
45348234 |
ttctctaaggaattatcagattcttcatccgcaaggtctccgcaagactttggcagaatg |
45348175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 45357713 - 45357654
Alignment:
| Q |
2 |
ttctataaggaatgatcagattcttcatcggtaaggtcttcccaaaactttggcagaatg |
61 |
Q |
| |
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|||| |||||||| ||||||||||||||| | ||||||| | ||| |||||||||||||| |
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| T |
45357713 |
ttctctaaggaattatcagattcttcatccgcaaggtctccgcaagactttggcagaatg |
45357654 |
T |
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