View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5777_low_3 (Length: 479)
Name: NF5777_low_3
Description: NF5777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5777_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 153 - 458
Target Start/End: Original strand, 31128222 - 31128527
Alignment:
| Q |
153 |
ttagttccatgcttagttttataaaacaaacgatccaagagatatctaccaatctcagaaaatcggaactttaagagacctaaaacatatcgagggacct |
252 |
Q |
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| T |
31128222 |
ttagttccatgcttagttttataaaacaaacgatccaagagatatctaccaatcacagaaaatcggaactttaagagacctaaaacatatcgagggacct |
31128321 |
T |
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| Q |
253 |
aaaaagaatgtctcatagtgacgagttaaaaatccaacttgccatgcnnnnnnntaacaagttaaacatgtcgactcaacagggcaaatcaattttgtaa |
352 |
Q |
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| T |
31128322 |
aaaaagaatgtctcatagtgacgagttaaaaatccaacttgccatgcaaaaaaataacaagttaaacatgtcgactcaacagggcaaatcaattttgtaa |
31128421 |
T |
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| Q |
353 |
atactcttcaaactagaatctcatagctatcttggaccaacctttagagcatccacaatagaaatacttatttttgggttcttaataagaacctaaaaat |
452 |
Q |
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| T |
31128422 |
atactctttaaactagaatctttttgctatcttggaccaacctttagagcatccacaatagaaatacttatttttgggttcttaataagaacctaaaaat |
31128521 |
T |
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| Q |
453 |
gggtct |
458 |
Q |
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| T |
31128522 |
gggtct |
31128527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 31126522 - 31126678
Alignment:
| Q |
7 |
ggagcagagatgtagcaaaagagaaatgcaaagtgatatggttcattgggagttaaaaaccgggtgaagaaggtgttttgaagagcaaagaggtgttttg |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31126522 |
ggagaagagatgtagcaaaagagaaatgcaaagtgatatggttcattgggagttaaaaaccgggtgaagaaggtgttttgaagagcaaagaggtgttttg |
31126621 |
T |
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| Q |
107 |
aaagtttcgaagcacacaaacgtgtaaggctgtaactgacgacatattagttccatg |
163 |
Q |
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| T |
31126622 |
aaagttttgtagcacacaaacgtgtaaggccgtaactgacgacatattagttccatg |
31126678 |
T |
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