View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5777_low_5 (Length: 420)
Name: NF5777_low_5
Description: NF5777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5777_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 38396260 - 38396635
Alignment:
| Q |
20 |
tactagtttttaatttgaattagnnnnnnnnaacaatgtctctatcattgatttgtatatgcttagctcaacaaagcacaggccaccatgataaatataa |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38396260 |
tactagtttttaatttgaattagttttttttaacaatgtctctatcattgatttgtatatgcttagctcaacaaagcacaggccaccatgataaatataa |
38396359 |
T |
|
| Q |
120 |
ttagctagccaagctgagagaaattgacaggaagagagagagaagtcnnnnnnncgttacattatttgattttggagttagcattagcactctcattagg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38396360 |
ttagctagccaagctgagagaaattgacaggaagagagagagaagtcaaaaaa-cgttacattatttgattttggagttagcattagcactctcattagg |
38396458 |
T |
|
| Q |
220 |
gcttgattgataaagatggttttgctcacattcttaatacacgtacctctcaccatcacaacttgatgagttataacacttcacacacacaccaacacca |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38396459 |
gcttgattgataaagatggttttgctcacattcttaatacacgtacctctcaccatcacaacttgatgagttataacacttcacacacacaccaatacca |
38396558 |
T |
|
| Q |
320 |
tctcttaattattaaataaatgcaaaaatactaaaagaataattcttaggttttatattttgtaatttttgtgagtg |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38396559 |
tctcttaattattaaataaatgcaaaaatactaaaagaaaaattcttaggttttatattttgtaatttttgtgagtg |
38396635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University