View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5777_low_6 (Length: 355)
Name: NF5777_low_6
Description: NF5777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5777_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 16628704 - 16628366
Alignment:
| Q |
18 |
gcttcaagactatagcttttgcttcctttttctcactattggtaagaatttattttaagatttaattcatat------------cttactttaaacctaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16628704 |
gcttcaagactatagcttttgcttcctttttctcactattggtaagaatttattttaagatttaattcatataatgaaaaatatcttactttaaacctaa |
16628605 |
T |
|
| Q |
106 |
tttctaaaatgacacttattaatagtaatttagagtttgttttaacgcttcaatatattagaaagtaacaaaacaaaactggctttataattgtcactaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16628604 |
tttctaaaatgacacttattaatagtaatttagagtctgttttaacgcttcaatatattagaaagtaacaaaacaaaactggctttataattgtcactaa |
16628505 |
T |
|
| Q |
206 |
caatgttatttgactctttttgttttgactcaaatgttaattgactcttgagacttgggaagatataaagatacgtgtagtgtcatttcttagtattgaa |
305 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16628504 |
caatgttaattgactctttttgttttgactcaaatgttaattgactcttgagacttgggaagatataaagatacgtatagtgtcatttcttagtattgaa |
16628405 |
T |
|
| Q |
306 |
gaagccacagagctttttatctacactattattgtttcat |
345 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
16628404 |
gaagccacagagc-ttttatgtacactattattgtttcat |
16628366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University