View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5777_low_7 (Length: 350)
Name: NF5777_low_7
Description: NF5777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5777_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 336
Target Start/End: Original strand, 31935671 - 31935994
Alignment:
| Q |
13 |
catcatcaaacgcatagctataagatttaggacaagcagatttaaacatttccgaataaaccgaaggcgaacaactcgatggcgaaccaaacgcgccact |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31935671 |
catcatcaaacgcatagctataagatttaggacaagcagatttaaacatttccgaataaaccgaaggcgaacaactcgatggcgaaccaaacgcgccact |
31935770 |
T |
|
| Q |
113 |
acaacaatactccggtgtcccaaacgcaccacacgcgctattacacgcgtcaccaccgtccacactcagctccgagggacacctccggttaagatcctct |
212 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31935771 |
acaacaatactccggtgtcccaaacgcgccacacgcgctattacacgcgtcaccaccgtccactctcagctccgagggacacctccggttaagatcctct |
31935870 |
T |
|
| Q |
213 |
ccacatccagtgggctgacatgaacctgaaccgccactagtttcaaccatcaccggaagattgtaaccgtctacgagactaacgtcatagtaatctggcg |
312 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31935871 |
ccacatccagtggcctgacatgaacctgaaccgccactagtttcaaccatcaccggaagattgtaaccgtctacgagactaacgtcatagtaatctggcg |
31935970 |
T |
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| Q |
313 |
aactatttcctagagtgaattctg |
336 |
Q |
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|||||||||||||||||||||||| |
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| T |
31935971 |
aactatttcctagagtgaattctg |
31935994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 27975391 - 27975539
Alignment:
| Q |
13 |
catcatcaaacgcatagctataagatttaggacaagcagatttaaacatttccgaataaaccgaaggcgaacaactcgatggcgaaccaaacgcgccact |
112 |
Q |
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|||||||| | || |||||||| ||| |||| |||||| ||||||||||||||| |||| ||| || |||| ||| || |||||| |||||||||| |
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| T |
27975391 |
catcatcataagcgtagctatacgatctagggcaagcatttttaaacatttccgagtaaatcgacggtctacaagtcgccggtgaaccatacgcgccact |
27975490 |
T |
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| Q |
113 |
acaacaatactccggtgtcccaaacgcaccacacgcgctattacacgcg |
161 |
Q |
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| T |
27975491 |
acaacaatactcaggactaccaaaagcctcacacgcgctcttacacgcg |
27975539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 27975632 - 27975686
Alignment:
| Q |
254 |
ttcaaccatcaccggaagattgtaaccgtctacgagactaacgtcatagtaatct |
308 |
Q |
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|||||| |||| |||||||||||||||||| |||||||| ||||| ||| ||||| |
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| T |
27975632 |
ttcaactatcatcggaagattgtaaccgtcgacgagactcacgtcgtagaaatct |
27975686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 8810782 - 8810723
Alignment:
| Q |
101 |
aaacgcgccactacaacaatactccggtgtcccaaacgcaccacacgcgctattacacgc |
160 |
Q |
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||||||||| |||||||||| |||||| |||||||||| ||||| || ||||||||||| |
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| T |
8810782 |
aaacgcgccgttacaacaatattccggtttcccaaacgcgccacaagcactattacacgc |
8810723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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