View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5778-Insertion-12 (Length: 46)
Name: NF5778-Insertion-12
Description: NF5778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5778-Insertion-12 |
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| [»] chr4 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 39; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 23201461 - 23201499
Alignment:
| Q |
8 |
agcaattgcaaggtactaaagaaaatgcaatgaatatat |
46 |
Q |
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| T |
23201461 |
agcaattgcaaggtactaaagaaaatgcaatgaatatat |
23201499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 31430174 - 31430209
Alignment:
| Q |
8 |
agcaattgcaaggtactaaagaaaatgcaatgaata |
43 |
Q |
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| T |
31430174 |
agcaatcgcaaggtactaaagaaaatgcaacgaata |
31430209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 24971475 - 24971439
Alignment:
| Q |
8 |
agcaattgcaaggtactaaagaaaatgcaatgaatat |
44 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
24971475 |
agcaatcgcaaggtactaaagaaaatgcaatgaatat |
24971439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 31956145 - 31956181
Alignment:
| Q |
8 |
agcaattgcaaggtactaaagaaaatgcaatgaatat |
44 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
31956145 |
agcaatcgcaaggtactaaagaaaatgcaatgaatat |
31956181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 38795654 - 38795616
Alignment:
| Q |
8 |
agcaattgcaaggtactaaagaaaatgcaatgaatatat |
46 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
38795654 |
agcaatcgcaaggtactaaagaaaatgcaacgaatatat |
38795616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 10257209 - 10257171
Alignment:
| Q |
8 |
agcaattgcaaggtactaaagaaaatgcaatgaatatat |
46 |
Q |
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|||||| ||||||||||||||||||||||| |||||||| |
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| T |
10257209 |
agcaatcgcaaggtactaaagaaaatgcaacgaatatat |
10257171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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