View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5778-Insertion-6 (Length: 172)
Name: NF5778-Insertion-6
Description: NF5778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5778-Insertion-6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 6e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 6e-82
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 12502560 - 12502395
Alignment:
| Q |
8 |
acatgtgcagacaaatatattattcagagatatttcagctgccaatgggccagatgatatggaggttgcagccgttggtgcagtttgtgggttgttatat |
107 |
Q |
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| T |
12502560 |
acatgtgcagacaaatatattattcagagatatttcagctgccaatgggccagatgatatggaggttgcagccgttggtgcagtttgtgggttgttatat |
12502461 |
T |
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| Q |
108 |
gttatcttgaacacattgccacttgaaagta-tatgactgtgctcgcctacagaactgaccttgtt |
172 |
Q |
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| T |
12502460 |
gttatcttgaacacattgccacttgaaagtattatgactgtgcttgcctacagaactgaccttgtt |
12502395 |
T |
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Target: chr2; HSP #2
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 12479526 - 12479361
Alignment:
| Q |
8 |
acatgtgcagacaaatatattattcagagatatttcagctgccaatgggccagatgatatggaggttgcagccgttggtgcagtttgtgggttgttatat |
107 |
Q |
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|||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
12479526 |
acatttgcagacaaatatattatttagagatatttcatctgccaatgggccagatgatatggaggttgcagccgttggtgcagtttgcgggtttttatat |
12479427 |
T |
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| Q |
108 |
gttatcttgaacacattgccacttgaaagta-tatgactgtgctcgcctacagaactgaccttgtt |
172 |
Q |
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| T |
12479426 |
gttgtcttgaacacattgccaattgaaaggattatgactgtgctcgcctacagaactgaccttgtt |
12479361 |
T |
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