View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5778_high_10 (Length: 230)
Name: NF5778_high_10
Description: NF5778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5778_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 8433220 - 8433004
Alignment:
| Q |
1 |
ttgttacattgcttagctgttgagttgattgtaagggtcctccagctttgttcataccagttttctaattagtaatgaggtttgagaacctatggcaggg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8433220 |
ttgttacattgcttagctgttgagttgattgtaagggtcctccagctttgttcataccagttttctaattggtaatgaggtttgagaacctatggcaggg |
8433121 |
T |
|
| Q |
101 |
agggatagtcacaaatttgagagagacaattttttaaatttgtggtcgttccttgttataagttcttgtgcgctcatcttcttgttcagttgtaagattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8433120 |
agggatagtcacaaatttgagagagacaattttttaaatttgttgtccttccttgttataagttcttgtgcgctcatcttcttgttcagttgtaagattt |
8433021 |
T |
|
| Q |
201 |
gtggtttttccggcttc |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8433020 |
gtggtttttccggcttc |
8433004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University