View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5778_high_2 (Length: 412)
Name: NF5778_high_2
Description: NF5778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5778_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 12 - 399
Target Start/End: Complemental strand, 24518303 - 24517915
Alignment:
| Q |
12 |
atgaagcctacgagagaggaggtgataagtgaaaacaatggtaagctagaaatttcagagtcctttcttgcacttctagctggtggacttgttctcttta |
111 |
Q |
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| T |
24518303 |
atgaagcctacgagagaggaggtgataagtgaaaacaatggtaagctggaaatttcagagtcctttcttgcacttctagctggtggacttgttctcttta |
24518204 |
T |
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| Q |
112 |
ctatattgtacaatgtactattccttactgtaattaagccagccattgatggtccataacctatatccaagagctgtgtgatattaatttactaaacact |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24518203 |
ctatattgtacaatgtactattccttactgtaattaagccagccattgatggtccataacctatatccaagagctgtgtgatattaatttactaaacact |
24518104 |
T |
|
| Q |
212 |
ttgctacatatataaagttaaggtttggaactatagtactatcattttttgcaagggtcatgatcatgttattataattttaataatctctagtagaaat |
311 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24518103 |
ttgctacatgtataaagttaaggtttggaactatagtactatcattttttgcaagggtcatgaccatgttattataattttaataatctctagtagaaat |
24518004 |
T |
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| Q |
312 |
tgaatgggcagtagcttataccacataatttcacgattcataatttctat-aatnnnnnnntatatattactatgtgctagttcaattt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
24518003 |
tgaatgggcagtagcttataccacataatttcacgattcataatttctataaaaaaaaaaatatatattactatgtgctagttcaattt |
24517915 |
T |
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