View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5778_high_8 (Length: 235)
Name: NF5778_high_8
Description: NF5778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5778_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 214
Target Start/End: Complemental strand, 8300840 - 8300638
Alignment:
| Q |
12 |
gagatgaagggagaaaatctggatagtcttgacgaaaaatggatgataattaaggtggttgtgttggataattctttgctgtttgttagatatatcaaaa |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8300840 |
gagaagaagggagaaaatctggatagtcttgacgaaaaatggatgataattaaggtggttgtgttggataattctttgctgtttgttagatatatcaaaa |
8300741 |
T |
|
| Q |
112 |
actttacgctgaattttcttgagtctatcaagtctatgaaggatagagtggaattaaaagggaactcagaaagtatcagagttgaaatgcaaactatgga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8300740 |
actttacgctgaattttcttgagtctatcaagtctatggaggatagagtggaattaaaagggaactcagaaagtatcagagttgaaatgcaaactatgga |
8300641 |
T |
|
| Q |
212 |
gta |
214 |
Q |
| |
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||| |
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| T |
8300640 |
gta |
8300638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 8297262 - 8297062
Alignment:
| Q |
12 |
gagatgaagggagaaaatctggatagtcttgacgaaaaatggatgataattaaggtggttgtgttggataattctttgctgtttgttagatatatcaaaa |
111 |
Q |
| |
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|||| |||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||| |||||||||||||| ||||| |||||||| |||||| |
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| T |
8297262 |
gagaagaagggagaaaatctggataatctggatgaaaaatggatgataattaaggtggctgtgatggataattctttggtgtttattagatatttcaaaa |
8297163 |
T |
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| Q |
112 |
actttacgctgaattttcttgagtctatcaagtctatgaaggatagagtggaattaaaagggaactcagaaagtatcagagttgaaatgcaaactatgga |
211 |
Q |
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|||| | |||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8297162 |
acttgatgctgaattttctcgagtctatcaagtctatggaggatagaatggaattaaaagggaacttagaaagtatcagagttgaaatgcaaactatgga |
8297063 |
T |
|
| Q |
212 |
g |
212 |
Q |
| |
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| |
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|
| T |
8297062 |
g |
8297062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 24 - 218
Target Start/End: Original strand, 18279397 - 18279591
Alignment:
| Q |
24 |
gaaaatctggatagtcttgacgaaaaatggatgataattaaggtggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctga |
123 |
Q |
| |
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||||||||||||| |||||| | | ||||||||||||| || |||| ||| |||||| |||| || | || |||||||||||| ||||||||||| |
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| T |
18279397 |
gaaaatctggataatcttgatgtacaatggatgataatcaatgtggcaaagtttgataatattttgacgtatattggatatatcaaaagctttacgctga |
18279496 |
T |
|
| Q |
124 |
attttcttgagtctatcaagtctatgaaggatagagtggaattaaaagggaactcagaaagtatcagagttgaaatgcaaactatggagtataat |
218 |
Q |
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||||||| |||||||| |||||| || |||||||| |||||||||||||||||| ||||||| ||| |||||||| ||||||||||||| ||||| |
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| T |
18279497 |
attttctcgagtctattaagtctttggaggatagaatggaattaaaagggaacttagaaagtgtcaaagttgaaaagcaaactatggaggataat |
18279591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 217
Target Start/End: Complemental strand, 1145428 - 1145259
Alignment:
| Q |
48 |
aaatggatgataattaaggtggttgtgttggataattctttgctgtttgttagatatatcaaaaactttacgctgaattttcttgagtctatcaagtcta |
147 |
Q |
| |
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|||||||||||||| || |||| | ||| |||||| |||| |||||||||| ||| |||| |||||| ||||||||||| ||||||||||||| | |
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| T |
1145428 |
aaatggatgataatcaatgtggctaagtttgataatattttgacgtttgttagaagtatgaaaagctttacactgaattttctcgagtctatcaagtatc |
1145329 |
T |
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| Q |
148 |
tgaaggatagagtggaattaaaagggaactcagaaagtatcagagttgaaatgcaaactatggagtataa |
217 |
Q |
| |
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|| |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |
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|
| T |
1145328 |
tggaggatagaatggaattaaaagggaacttagaaagtatcagaattgaaatgcaaactatggaggataa |
1145259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 21120553 - 21120585
Alignment:
| Q |
180 |
gaaagtatcagagttgaaatgcaaactatggag |
212 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
21120553 |
gaaagtctcagagttgaaatgcaaactatggag |
21120585 |
T |
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