View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5778_high_9 (Length: 231)
Name: NF5778_high_9
Description: NF5778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5778_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 27634042 - 27633827
Alignment:
| Q |
1 |
aacaacattggagcttcatcttcaacaacacctactgaggtgttacaagaaattcctgttttcgatattcgcatgatgaatgaggttgacgatcacagta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27634042 |
aacaacattggagcttcatcttcaacaacacctactgaggtgtcacaagatattcctgttttcgatattcgcatgatgaatgaggttgacgatcacagta |
27633943 |
T |
|
| Q |
101 |
tttcggtggatgagaaaggttgttttgtatatttgattttaataatatttatgtatgtgtgtgattactatgttctgtatgatatatcaattttgttctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27633942 |
tttcggtggatgagaaaggttgttttttatatttgattttaataatatttatgaatgtgtgtgattactatgttctgtatgatatatcaattttgttctt |
27633843 |
T |
|
| Q |
201 |
cttggatgtattttat |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27633842 |
cttggatgtattttat |
27633827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 34518860 - 34518645
Alignment:
| Q |
1 |
aacaacattggagcttcatcttcaacaacacctactgaggtgttacaagaaattcctgttttcgatattcgcatgatgaatgaggttgacgatcacagta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| | |||||||||||||||| |
|
|
| T |
34518860 |
aacaacattggagcttcatcttcaacaacacctactgaggtgtcacaagatattcctgtttttgatattcgcatgatgaataaagttgacgatcacagta |
34518761 |
T |
|
| Q |
101 |
tttcggtggatgagaaaggttgttttgtatatttgattttaataatatttatgtatgtgtgtgattactatgttctgtatgatatatcaattttgttctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34518760 |
tttcggtggatgagaaaggttgttttttatatttgattttaataatatttatgcatgtgtgtgattactatgttctgtatgatatatcaattttgttctt |
34518661 |
T |
|
| Q |
201 |
cttggatgtattttat |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34518660 |
cttggatgtattttat |
34518645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 34527799 - 34527707
Alignment:
| Q |
73 |
atgatgaatgaggttgacgatcacagtatttcggtggatgagaaaggttgttttgtat-atttgattttaataatatttatgtatgtgtgtga |
164 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| | |||||||||||||||||| | | |||||||||||||||| ||| | ||||||||||| |
|
|
| T |
34527799 |
atgacgaatgaggttgatgatcacagtatttctggagatgagaaaggttgttttttttaatttgattttaataatctttctttatgtgtgtga |
34527707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 34527656 - 34527620
Alignment:
| Q |
180 |
tgatatatcaattttgttcttcttggatgtattttat |
216 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34527656 |
tgatatatcaattttattcttcttggatgtattttat |
34527620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University