View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5778_low_11 (Length: 242)
Name: NF5778_low_11
Description: NF5778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5778_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 30040402 - 30040175
Alignment:
| Q |
11 |
cacagacatggactaatggaaataaagtagatggaataagccatttacaacataaccgacacttttgatcaataaaaaggatgttatgaaacattaccat |
110 |
Q |
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| T |
30040402 |
cacacacatggactaatggaaataaagtagatggaataagccatttacaacataaccgacacttttgatcaataaaaaggatgttatgaaacattaccat |
30040303 |
T |
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| Q |
111 |
cttgaggatcagtaattgaaaagatgagatgaatttgagcccaaaagaataacaaaaagagaaaaatactttgtatttgcatgttagaaatagttctcaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |
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| T |
30040302 |
cttgaggatcagtaattgaaaagatgagatgaatttgagcccataagaataacaaaaagagaaacacactttgtattttcatgttagaaatagttctcaa |
30040203 |
T |
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| Q |
211 |
tcaacttcttgtccatttgctgattata |
238 |
Q |
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||||||||||| | |||||||||||||| |
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| T |
30040202 |
tcaacttcttgacaatttgctgattata |
30040175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 30030215 - 30029988
Alignment:
| Q |
11 |
cacagacatggactaatggaaataaagtagatggaataagccatttacaacataaccgacacttttgatcaataaaaaggatgttatgaaacattaccat |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30030215 |
cacacacatggactaatggaaataaagtagatggaataagccatttacaacataaccgacacttttgatcaataaaaaggatgttatgaaacattaccat |
30030116 |
T |
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| Q |
111 |
cttgaggatcagtaattgaaaagatgagatgaatttgagcccaaaagaataacaaaaagagaaaaatactttgtatttgcatgttagaaatagttctcaa |
210 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |
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| T |
30030115 |
cttgaggatcagtaatagaaaagatgagatgaatttgagcccataagaataacaaaaagagaaacacactttgtatttccatgttagaaatagttctcaa |
30030016 |
T |
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| Q |
211 |
tcaacttcttgtccatttgctgattata |
238 |
Q |
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||||||||||| | |||||||||||||| |
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| T |
30030015 |
tcaacttcttgacaatttgctgattata |
30029988 |
T |
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