View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5778_low_15 (Length: 208)

Name: NF5778_low_15
Description: NF5778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5778_low_15
NF5778_low_15
[»] chr1 (6 HSPs)
chr1 (16-207)||(29099886-29100070)
chr1 (156-208)||(19258742-19258794)
chr1 (156-208)||(28647422-28647474)
chr1 (154-208)||(2509093-2509147)
chr1 (154-208)||(34307206-34307260)
chr1 (154-208)||(46901803-46901857)
[»] chr7 (14 HSPs)
chr7 (154-208)||(5811231-5811285)
chr7 (154-208)||(20086696-20086750)
chr7 (154-208)||(23980200-23980254)
chr7 (154-207)||(46475094-46475147)
chr7 (154-208)||(28307563-28307617)
chr7 (154-208)||(31148359-31148413)
chr7 (154-208)||(42221031-42221085)
chr7 (151-208)||(30887769-30887826)
chr7 (154-207)||(45782728-45782781)
chr7 (154-208)||(13108217-13108270)
chr7 (154-208)||(21807390-21807444)
chr7 (154-208)||(26972271-26972325)
chr7 (154-208)||(34828134-34828188)
chr7 (154-207)||(34108496-34108549)
[»] chr5 (9 HSPs)
chr5 (154-207)||(17225387-17225440)
chr5 (154-208)||(1815684-1815738)
chr5 (154-208)||(2237345-2237399)
chr5 (154-208)||(9408107-9408161)
chr5 (154-207)||(39370997-39371050)
chr5 (156-208)||(4300613-4300665)
chr5 (156-208)||(14831613-14831665)
chr5 (154-208)||(31800627-31800681)
chr5 (154-208)||(40888010-40888064)
[»] chr8 (5 HSPs)
chr8 (154-208)||(30432408-30432462)
chr8 (154-208)||(31318874-31318928)
chr8 (154-207)||(42162668-42162721)
chr8 (154-208)||(33726080-33726135)
chr8 (154-206)||(44081851-44081903)
[»] chr6 (4 HSPs)
chr6 (154-208)||(14023003-14023057)
chr6 (154-208)||(24208513-24208567)
chr6 (154-208)||(3986973-3987027)
chr6 (154-206)||(13697639-13697691)
[»] chr4 (8 HSPs)
chr4 (158-208)||(45829329-45829379)
chr4 (158-208)||(46192428-46192478)
chr4 (154-208)||(35544981-35545035)
chr4 (154-207)||(51038833-51038887)
chr4 (154-207)||(44275776-44275829)
chr4 (154-208)||(3672343-3672397)
chr4 (154-208)||(6112699-6112753)
chr4 (154-208)||(7217834-7217888)
[»] chr2 (9 HSPs)
chr2 (158-208)||(37914308-37914358)
chr2 (154-207)||(24137160-24137213)
chr2 (158-208)||(36315630-36315680)
chr2 (154-208)||(41188838-41188892)
chr2 (154-208)||(44958182-44958236)
chr2 (154-201)||(6376306-6376353)
chr2 (154-208)||(3830965-3831019)
chr2 (154-208)||(14573064-14573118)
chr2 (154-208)||(33732638-33732692)
[»] scaffold0062 (1 HSPs)
scaffold0062 (151-208)||(6787-6844)
[»] chr3 (7 HSPs)
chr3 (154-208)||(34749966-34750020)
chr3 (154-208)||(36749475-36749529)
chr3 (154-208)||(44000058-44000112)
chr3 (154-208)||(46112012-46112066)
chr3 (154-208)||(51339851-51339905)
chr3 (154-207)||(36370406-36370459)
chr3 (154-207)||(39467169-39467222)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 29100070 - 29099886
Alignment:
Q  16 atgtcaacagataaacgtatagatatagatatagtactaaaattttcacaaaacacgtgtttccactatgtcaacagataaacgtattgatatagatata 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      ||||||||||    
T  29100070 atgtcaacagataaacgtatagatatagatatagtactaaaattttcacaaaacacgtgtttccactatgttaacagataaacg------tatagatata 29099977  T
Q  116 gatcttggttgagtttcctnnnnnnnnnntctttgttaagtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttg 207  Q
    |||||| ||| ||||||||             || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29099976 gatctttgttaagtttcctaaaaaaaaaa-aattattaagtaatttcacatcacatcatcaccccttttaatttcttttttcaatgtttttg 29099886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 19258742 - 19258794
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  19258742 taatttcacatcacatcaccaccccttttcatctcttttttcaatgtttttgc 19258794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 28647474 - 28647422
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||||||||||||| |||||||||| |||| || |||||||||||||||    
T  28647474 taatttcacatcacatcaccaccccttttcatctattctttcaatgtttttgc 28647422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 2509147 - 2509093
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||| ||||| |||| ||||||| |||||||||||||||    
T  2509147 agtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgc 2509093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 34307206 - 34307260
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||||||||| |||| || |||| |||||||||||||||    
T  34307206 agtaattttacatcatatcatcaccctttttcatatcttctttcaatgtttttgc 34307260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 46901803 - 46901857
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||||||||| |||| ||||||| ||| |||||||||||    
T  46901803 agtaattttacatcatatcatcaccctttttcatctcttcttttaatgtttttgc 46901857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 5811231 - 5811285
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  5811231 agtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgc 5811285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 20086696 - 20086750
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||    
T  20086696 agtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgc 20086750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 23980254 - 23980200
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    ||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  23980254 agtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgc 23980200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 46475147 - 46475094
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttg 207  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  46475147 agtaatttcacatcacatcgtcaccccttttcatctcttctttcaatgtttttg 46475094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 28307563 - 28307617
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||    
T  28307563 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgc 28307617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 31148413 - 31148359
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||    
T  31148413 agtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgc 31148359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 42221031 - 42221085
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| ||||||||||||||| || |||| |||||||||||||||    
T  42221031 agtaatttaacatcatatcatcacccctttttatatcttctttcaatgtttttgc 42221085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 30887826 - 30887769
Alignment:
Q  151 ttaagtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    ||||||||||| |||||| |||||||||| |||| |||||||  ||||||||||||||    
T  30887826 ttaagtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttgc 30887769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 45782728 - 45782781
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttg 207  Q
    |||||||| |||||| |||||||||| |||| ||||||| ||||||||||||||    
T  45782728 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttg 45782781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 13108270 - 13108217
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    ||||||||||||||||||| ||||||| ||| ||||||| |||||| ||||||||    
T  13108270 agtaatttcacatcacatcctcacccc-tttcatctcttctttcaacgtttttgc 13108217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 21807390 - 21807444
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    ||||||||||||| ||||||||| || |||| ||||||| ||||||| |||||||    
T  21807390 agtaatttcacataacatcatcatccattttcatctcttctttcaatatttttgc 21807444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 26972271 - 26972325
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||||||||| |||| ||||||  |||||||||||||||    
T  26972271 agtaattttacatcatatcatcaccctttttcatctctcctttcaatgtttttgc 26972325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 34828188 - 34828134
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| ||||||| | ||||| ||||||| |||||||||||||||    
T  34828188 agtaattttacatcatatcatcatcacttttcatctcttctttcaatgtttttgc 34828134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 34108549 - 34108496
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttg 207  Q
    |||||||| |||||| |||||||||| |||| |||||||  |||||||||||||    
T  34108549 agtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttg 34108496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 17225440 - 17225387
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttg 207  Q
    ||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  17225440 agtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttg 17225387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 1815684 - 1815738
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||    
T  1815684 agtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgc 1815738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 2237399 - 2237345
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||    
T  2237399 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgc 2237345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 9408107 - 9408161
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||    
T  9408107 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgc 9408161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 39371050 - 39370997
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttg 207  Q
    |||||||| |||||| |||||||||| |||| ||||||| ||||||||||||||    
T  39371050 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttg 39370997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 4300613 - 4300665
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||||||||||||| ||||  |||| ||||||| |||||||||||||||    
T  4300613 taatttcacatcacatcaccaccattttttatctcttatttcaatgtttttgc 4300665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 14831665 - 14831613
Alignment:
Q  156 taatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||| |||||| |||||||||| |||| ||||||| |||||||||||||||    
T  14831665 taattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgc 14831613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 31800681 - 31800627
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| ||||||||||||||| |||| || ||||||| |||||||    
T  31800681 agtaattttacatcatatcatcaccccttttcatcttttctttcaatatttttgc 31800627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 40888010 - 40888064
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||| ||||| |||| ||||||| |||||||||||||||    
T  40888010 agtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgc 40888064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 30432462 - 30432408
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| ||||||||||||||| ||||||| |||||||||||||||    
T  30432462 agtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgc 30432408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 31318928 - 31318874
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||    
T  31318928 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgc 31318874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 42162721 - 42162668
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttg 207  Q
    |||||||| |||||| |||||||||| |||| ||||||| ||||||||||||||    
T  42162721 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttg 42162668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 33726135 - 33726080
Alignment:
Q  154 agtaatttcacatcacatcatcaccc-cttttaatctcttttttcaatgtttttgc 208  Q
    ||||||||||||||||||| ||| || ||||| ||||||| |||||||||||||||    
T  33726135 agtaatttcacatcacatcgtcatccacttttcatctcttctttcaatgtttttgc 33726080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 44081903 - 44081851
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgttttt 206  Q
    |||||||| |||| | |||||||||| |||| ||||||| |||||||||||||    
T  44081903 agtaattttacattatatcatcaccctttttcatctcttctttcaatgttttt 44081851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 14023057 - 14023003
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    ||||||||||||||||||| ||||||||| | ||||||| |||||||||||||||    
T  14023057 agtaatttcacatcacatcgtcaccccttgtcatctcttctttcaatgtttttgc 14023003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 24208567 - 24208513
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    ||||||||||||||||||| |||||| |||| ||||||| |||||||||||||||    
T  24208567 agtaatttcacatcacatcctcaccctttttcatctcttctttcaatgtttttgc 24208513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 3986973 - 3987027
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| || |||| ||||||| ||||||| |||||||||||||||    
T  3986973 agtaattttacatcatattatcatcccttttcatctcttctttcaatgtttttgc 3987027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 13697691 - 13697639
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgttttt 206  Q
    |||||||| | |||| |||||||||| |||| ||||||| |||||||||||||    
T  13697691 agtaattttatatcatatcatcacccgttttcatctcttctttcaatgttttt 13697639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 45829329 - 45829379
Alignment:
Q  158 atttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||||||||    
T  45829329 atttcacatcacattatcacccctttttatctcttctttcaatgtttttgc 45829379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 46192478 - 46192428
Alignment:
Q  158 atttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||||||||    
T  46192478 atttcacatcacattatcacccctttttatctcttctttcaatgtttttgc 46192428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 35545035 - 35544981
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| ||||||||||||||| || |||| |||||||||||||||    
T  35545035 agtaattttacatcatatcatcacccctttttatatcttctttcaatgtttttgc 35544981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 51038887 - 51038833
Alignment:
Q  154 agtaatttcacatcacatcatcacccc-ttttaatctcttttttcaatgtttttg 207  Q
    ||||||||||||||||| ||||||||| |||| ||||||| ||||||||||||||    
T  51038887 agtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttg 51038833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 44275829 - 44275776
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttg 207  Q
    |||||||| |||||| |||||||||| |||||||||||| ||||||| ||||||    
T  44275829 agtaattttacatcatatcatcaccctttttaatctcttctttcaatatttttg 44275776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 3672397 - 3672343
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||  |||||| |||||||||| |||| ||||||| |||||||||||||||    
T  3672397 agtaattatacatcatatcatcaccctttttcatctcttctttcaatgtttttgc 3672343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 6112753 - 6112699
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| ||||||| || |||| ||||||| |||||||||||||||    
T  6112753 agtaattttacatcatatcatcatcctttttcatctcttctttcaatgtttttgc 6112699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 7217888 - 7217834
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||||||||| |||| ||||||| ||| |||||||||||    
T  7217888 agtaattttacatcatatcatcacccttttttatctcttattttaatgtttttgc 7217834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 37914308 - 37914358
Alignment:
Q  158 atttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||||||||    
T  37914308 atttcacatcacattatcacccctttttatctcttctttcaatgtttttgc 37914358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 24137160 - 24137213
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttg 207  Q
    ||||||||||||||||||| ||| ||||||| ||||||| ||||||||||||||    
T  24137160 agtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttg 24137213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 36315680 - 36315630
Alignment:
Q  158 atttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||||||||| |||||| ||||| ||||||| |||||||||||||||    
T  36315680 atttcacatcacattatcacctctttttatctcttctttcaatgtttttgc 36315630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 41188892 - 41188838
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||||||||||| ||||||| || || |||||||||||||||||    
T  41188892 agtaattttacatcacatcatcatcccttttcatatcatttttcaatgtttttgc 41188838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 44958236 - 44958182
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||    
T  44958236 agtaattttacatcatatcatcacccttttttatctcttctttcaatgtttttgc 44958182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 6376306 - 6376353
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatg 201  Q
    ||||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  6376306 agtaatttcacatcacatcctcacccattttcatctcttctttcaatg 6376353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 3830965 - 3831019
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| || |||||| ||||| ||||||| |||||||||||||||    
T  3830965 agtaattttacatcagataatcaccacttttcatctcttctttcaatgtttttgc 3831019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 14573118 - 14573064
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||||||||| |||  ||||||| |||||||||||||||    
T  14573118 agtaattttacatcatatcatcacccttttccatctcttctttcaatgtttttgc 14573064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 33732692 - 33732638
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||| ||||| |||| ||||||| |||||||||||||||    
T  33732692 agtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgc 33732638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 6844 - 6787
Alignment:
Q  151 ttaagtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    ||||||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||    
T  6844 ttaagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgc 6787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 34749966 - 34750020
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||    
T  34749966 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgc 34750020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 36749529 - 36749475
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||    
T  36749529 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgc 36749475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 44000112 - 44000058
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||    
T  44000112 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgc 44000058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 46112012 - 46112066
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||    
T  46112012 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgc 46112066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 51339851 - 51339905
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttgc 208  Q
    |||||||| |||||| |||||||||| |||| ||||||| |||||||||||||||    
T  51339851 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgc 51339905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 36370406 - 36370459
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttg 207  Q
    |||||||| |||||| |||||||||| |||| ||||||| ||||||||||||||    
T  36370406 agtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttg 36370459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 39467169 - 39467222
Alignment:
Q  154 agtaatttcacatcacatcatcaccccttttaatctcttttttcaatgtttttg 207  Q
    |||||||||| |||||||| ||||||||||| ||||||| ||||||| ||||||    
T  39467169 agtaatttcatatcacatcctcaccccttttcatctcttctttcaatatttttg 39467222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University