View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5778_low_2 (Length: 503)
Name: NF5778_low_2
Description: NF5778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5778_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 6 - 487
Target Start/End: Complemental strand, 30029981 - 30029488
Alignment:
| Q |
6 |
tcagacaaaaatacttgtctcaagcaaagaaaggatattatgcattgcatgtaacatgataactagcaagaagcaaggtgaagtgtataaggtttaggat |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||| |
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| T |
30029981 |
tcaggcaaaaatacttgtctcaagcaaagaaaggatattatgcattgcatgtaacatgataactagcaagaagcaaagtgaagtgtagaaagtttaggat |
30029882 |
T |
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| Q |
106 |
gaagaggnnnnnnnn-----------tagaatgaagtctctctcataaagagaaatacaaagaaaaagcttgacttggttgtttcctactccatatttat |
194 |
Q |
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| T |
30029881 |
gaagaggaagtaatgaaggaaaaaaatagaatgaagtctg----ataaagagaaatacaaagaaaaagcttgacttggttgtttcctactccatatttat |
30029786 |
T |
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| Q |
195 |
tgatttttcttatcttagaagctaatccaattcaatataatgtcgcatgccacttactata----acacaatcataacctttt-ctgactttttcaaaca |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
30029785 |
tgatttttcttatcttagaagctaatccaattcaatataatgtcgcatgccacttactatatataacacaatcataacctttttctgactttttcaaaca |
30029686 |
T |
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| Q |
290 |
ctaacttagtcacaaacgaattgctatgttgtccttttattcacttctcagcaagttgctcttaagtgttctgtcatcattaattttactttgttagtga |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30029685 |
ctaacttagtcacaaacgaattgctatgttgtccttttattcacttctcagcaagttgctcttaagtgttctgtcatcattaattttactttgttagtga |
30029586 |
T |
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| Q |
390 |
ccaatagaaaaatatcttgtcttgcaacttaggcaaggcatcatttcattgatgttattattatcacaagccattgacagcagttgggtaggtgtgac |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30029585 |
ccaatagaaaaatatcttgtcttgcaacttaggcaaggcatcatttcattgatgttattattatcacaagccattgacagcagttgggtaggtgtgac |
30029488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 30040168 - 30040111
Alignment:
| Q |
6 |
tcagacaaaaatacttgtctcaagcaaagaaaggatattatgcattgcatgtaacatg |
63 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30040168 |
tcagacaaaaatacttgcctcaagcaaagaaaggatattatgcattgcatgtaacatg |
30040111 |
T |
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