View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5778_low_4 (Length: 391)
Name: NF5778_low_4
Description: NF5778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5778_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 376
Target Start/End: Complemental strand, 25978673 - 25978302
Alignment:
| Q |
11 |
cagagacggaggaagagttgtgtgctggaattctttacatctgttgctaattagtttgtctcttttat------tgagcnnnnnnnnaaacttggagttg |
104 |
Q |
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| T |
25978673 |
cagagacggaggaagagttgtgtgctggaattctttacatctgttgctaattagtttgtgtcttttatatatattgagcttttttttaaacttggagttg |
25978574 |
T |
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| Q |
105 |
tgatgtgtgtttgtgtttattgattgtttgtttaggaatttctatgtttccaaagtaaccgaaggtactattgaattaatccaatgattgacattggttt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25978573 |
tgatgtgtgtttgtgtttattgattgtttgtttaggaatttctatgtttccaaagtaaccgaaggtactattgaattaatccaatgattgacattggttt |
25978474 |
T |
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| Q |
205 |
aggattatttgctagagcttattttccaacaaggagtttgaattctctcttcaacggctctagggtaagcagagcgtacatgaagccattgaagacttgt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25978473 |
aggattatttgctagagcttattttccaacaaggagtttgaattctctcttcaacggctctagggtgcttagagcgtacatgaagccattgaagacttgt |
25978374 |
T |
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| Q |
305 |
acttttgcagaacgaagcgctttgagcttgaaccaatattacggagagacaactttagatttggacaaatat |
376 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25978373 |
acttttgcagaatgaagcgctttgagcttgaaccaatattacggagagacaactttagatttggacaaatat |
25978302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 25973318 - 25973271
Alignment:
| Q |
11 |
cagagacggaggaagagttgtgtgctggaattctttacatctgttgct |
58 |
Q |
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|||||||||||||||||| ||||||||||||| |||| || ||||||| |
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| T |
25973318 |
cagagacggaggaagagtcgtgtgctggaattgtttaaatttgttgct |
25973271 |
T |
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