View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5778_low_5 (Length: 390)
Name: NF5778_low_5
Description: NF5778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5778_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 12502932 - 12502604
Alignment:
| Q |
1 |
tgataaaatcatcttttttaagaaaatatgaaatgattctatgtatctctatgtaccatttgtttttaagctggtcattgttaatttcagattctatgat |
100 |
Q |
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| T |
12502932 |
tgataaaatcatcttttttaagaaaatatgaaatgattctatgtatctctatgtaccatttgtttttaagctggtcattgttaatttcagattctatgat |
12502833 |
T |
|
| Q |
101 |
tgctgaggatgatatgactggcgacgatgaagtcatggaagtagctctggataggaaattggatcaacaaatttgtaattctattgatactcgcttcctt |
200 |
Q |
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| T |
12502832 |
tgctgaggatgatatgactggcgacgatgaagtcatggaagtagctctggataggaaattggatcaacaaatttgtaattctattgatactcgcttcctt |
12502733 |
T |
|
| Q |
201 |
ctgcaactggtataccatcatgcaaatgacttttgtatcttaagtgccatcnnnnnnntttctttaccannnnnnnngaaaaattggtgacctc----ag |
296 |
Q |
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| T |
12502732 |
ctgcaactggtataccatcatgcaaatgacttttgtatcttaagtgccatcaaaaaaatttctttaccattttttttgaaaaattggtgacctcacttag |
12502633 |
T |
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| Q |
297 |
tgggaaaaggcttggttgttgttgtattt |
325 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
12502632 |
tgggaaaaggcttggttgttgttgtattt |
12502604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 44 - 251
Target Start/End: Complemental strand, 12479792 - 12479585
Alignment:
| Q |
44 |
tatctctatgtaccatttgtttttaagctggtcattgttaatttcagattctatgattgctgaggatgatatgactggcgacgatgaagtcatggaagta |
143 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| |
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| T |
12479792 |
tatctctctgtaccatttgtttttaagctggtcagtgttaatttcagattctatgattgctgaggatgatattactggcaatgatgaagtcatggaagtg |
12479693 |
T |
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| Q |
144 |
gctctggataggaaattggatcaacaaatttgtaattctattgatactcgcttccttctgcaactggtataccatcatgcaaatgacttttgtatcttaa |
243 |
Q |
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||| ||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
12479692 |
gctttggataggaaattggatcaacaaatttataattccatagatactcgcttccttctgcaactggtatatcatcatgcaaatgacttttgtatcttga |
12479593 |
T |
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| Q |
244 |
gtgccatc |
251 |
Q |
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|||||||| |
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| T |
12479592 |
gtgccatc |
12479585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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