View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5778_low_6 (Length: 379)
Name: NF5778_low_6
Description: NF5778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5778_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 6893750 - 6894112
Alignment:
| Q |
1 |
tgatacattgtcaacaaattacagttaatcatatgtgtgattttagaatccaattgtgcatttgtgggtgagcggtgagctcagaaaaatcatggtgaca |
100 |
Q |
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| T |
6893750 |
tgatacattgtcaacaaattacagtcaatcatatgtgtgactttagaatccaattgtgcatttgtgggtgagcggtgagctcagaaaaatcatggtgaca |
6893849 |
T |
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| Q |
101 |
ttatgattttgatgagtgcatgtttggaatcacattgaatttgacaaaatcacattaagccaccttggtttcgttgaagcttcaaagtgctgcttttgca |
200 |
Q |
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| T |
6893850 |
ttgtgattttgatgagtacatgtttggaatcacattgaatttgacaaaatcacattaagccaccttggtttcgttgaaacttcaaagtgctgcttttgca |
6893949 |
T |
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| Q |
201 |
aaatcacagtgaaccatcatgattttgtcaatttcactgcaaattcaaacatgcactaaaactctgaagtgtagtttttgccaaaattacgacgactcac |
300 |
Q |
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| T |
6893950 |
aaatcacagtgagccatcatgattttgtcaatctcactgcaaattcaaacatgcactaaaactctgaagtgtagtttttgccaaaattacgatgactcac |
6894049 |
T |
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| Q |
301 |
cataattatattaatctcgctaagaatccaaaccttcatgaagaagttataattaaagtgaaa |
363 |
Q |
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| T |
6894050 |
cataattatattaatctcgctaagaatccaaaccttcacgaagaagttataattaaagtgaaa |
6894112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 9969665 - 9969697
Alignment:
| Q |
259 |
aaactctgaagtgtagtttttgccaaaattacg |
291 |
Q |
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| T |
9969665 |
aaactctgaactgtagtttttgccaaaattacg |
9969697 |
T |
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