View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5778_low_9 (Length: 270)
Name: NF5778_low_9
Description: NF5778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5778_low_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 270
Target Start/End: Original strand, 6893392 - 6893655
Alignment:
| Q |
6 |
cataggtagagagaatacaaaatcaagaagatattcagcatcaattattagaagtattagagaagattcaaagtcttttagatcaaatataaccatttct |
105 |
Q |
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| T |
6893392 |
cataagtagagagaatacaaaatcaagaagatattcagcatcaattattagaagtattagagaagattcaaagtcttttagatcaaatataaccatttct |
6893491 |
T |
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| Q |
106 |
agcactgcttcttctcctggatatacattaaaaggtacattaatttcatttttatttcacttcaagaagttcataatgtatttannnnnnnnnnnnnnnn |
205 |
Q |
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| T |
6893492 |
agcactgcttcttctcctggatatacattaaaaggtacattaatttcatttttatttcacttcaagaagttcataatgttttta-ttttttttatttttt |
6893590 |
T |
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| Q |
206 |
ngtgactaaagttacatcaagtttttcttaaaattttatgatttattttgcagatgaaattgacc |
270 |
Q |
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| T |
6893591 |
tgtgactaaagttacatcaagtttttcttaaaattttatgatttgttttgcagatgaaattgacc |
6893655 |
T |
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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 5940035 - 5939950
Alignment:
| Q |
62 |
ttagagaagattcaaagtcttttagatcaaatataaccatttctagcactgcttcttctcctggatatacattaaaaggtacatta |
147 |
Q |
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| T |
5940035 |
ttagagaagatacaaggtctcaaagatcaaatataaccatttctagtactgcttcttctcctggatacccttttaaaggtacatta |
5939950 |
T |
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