View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5779-Insertion-1 (Length: 1158)

Name: NF5779-Insertion-1
Description: NF5779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5779-Insertion-1
NF5779-Insertion-1
[»] chr4 (11 HSPs)
chr4 (6-1013)||(50653207-50654217)
chr4 (783-874)||(2016513-2016604)
chr4 (776-830)||(52810650-52810704)
chr4 (3-122)||(50635897-50636016)
chr4 (779-864)||(46528951-46529036)
chr4 (786-830)||(5427153-5427197)
chr4 (6-122)||(50640992-50641108)
chr4 (779-835)||(53738236-53738292)
chr4 (787-830)||(49544357-49544400)
chr4 (779-821)||(4645641-4645683)
chr4 (779-864)||(37288897-37288982)
[»] chr3 (12 HSPs)
chr3 (779-864)||(16060913-16060998)
chr3 (779-864)||(16051563-16051648)
chr3 (779-864)||(16045398-16045483)
chr3 (779-835)||(36020836-36020892)
chr3 (780-834)||(16033329-16033383)
chr3 (779-864)||(9178898-9178983)
chr3 (779-860)||(9180363-9180444)
chr3 (779-855)||(15820633-15820709)
chr3 (779-821)||(10450676-10450718)
chr3 (779-821)||(11244569-11244611)
chr3 (779-821)||(48511667-48511709)
chr3 (779-864)||(24453769-24453854)
[»] chr2 (13 HSPs)
chr2 (779-864)||(10862297-10862382)
chr2 (779-874)||(44266336-44266431)
chr2 (778-864)||(14288912-14288998)
chr2 (779-864)||(10861862-10861947)
chr2 (779-864)||(10862086-10862171)
chr2 (779-874)||(33532764-33532859)
chr2 (755-864)||(28193338-28193448)
chr2 (778-864)||(28193602-28193688)
chr2 (779-855)||(936812-936888)
chr2 (778-864)||(32197193-32197279)
chr2 (785-830)||(14289151-14289196)
chr2 (755-830)||(31761157-31761233)
chr2 (792-839)||(5721547-5721594)
[»] chr7 (17 HSPs)
chr7 (755-853)||(29780149-29780248)
chr7 (779-864)||(36270498-36270583)
chr7 (779-864)||(39550006-39550091)
chr7 (779-864)||(22686759-22686846)
chr7 (779-864)||(19843698-19843783)
chr7 (778-818)||(11469666-11469706)
chr7 (778-826)||(14991536-14991584)
chr7 (778-826)||(15421147-15421195)
chr7 (779-855)||(47346122-47346198)
chr7 (780-862)||(22206307-22206389)
chr7 (780-862)||(22228350-22228432)
chr7 (779-821)||(33909340-33909382)
chr7 (779-821)||(37755966-37756008)
chr7 (779-821)||(37756192-37756234)
chr7 (779-821)||(37761940-37761982)
chr7 (779-821)||(40121967-40122009)
chr7 (779-821)||(47346351-47346393)
[»] chr5 (8 HSPs)
chr5 (779-864)||(14769860-14769945)
chr5 (779-864)||(19439851-19439936)
chr5 (779-864)||(22196581-22196666)
chr5 (779-864)||(2471721-2471806)
chr5 (779-855)||(84062-84138)
chr5 (779-835)||(27429573-27429628)
chr5 (779-855)||(33040063-33040139)
chr5 (797-846)||(33590755-33590804)
[»] chr8 (6 HSPs)
chr8 (802-874)||(9596270-9596342)
chr8 (755-864)||(15711487-15711597)
chr8 (779-836)||(38287992-38288049)
chr8 (793-853)||(8452784-8452844)
chr8 (779-855)||(18464070-18464146)
chr8 (779-864)||(17607242-17607327)
[»] chr6 (6 HSPs)
chr6 (778-834)||(8427571-8427627)
chr6 (780-864)||(13673846-13673930)
chr6 (780-839)||(27443566-27443625)
chr6 (779-821)||(10733466-10733508)
chr6 (779-821)||(26842754-26842796)
chr6 (779-852)||(17096726-17096799)
[»] chr1 (11 HSPs)
chr1 (755-826)||(45858684-45858756)
chr1 (780-864)||(40521521-40521606)
chr1 (779-864)||(45443211-45443296)
chr1 (755-874)||(12287829-12287949)
chr1 (779-855)||(17294978-17295054)
chr1 (779-826)||(27958075-27958122)
chr1 (779-821)||(8520121-8520163)
chr1 (780-830)||(28950947-28950997)
chr1 (779-821)||(29228482-29228524)
chr1 (779-864)||(18585029-18585114)
chr1 (755-823)||(45403472-45403541)
[»] scaffold0785 (1 HSPs)
scaffold0785 (755-825)||(3123-3194)
[»] scaffold0003 (1 HSPs)
scaffold0003 (780-839)||(43736-43795)
[»] scaffold0012 (1 HSPs)
scaffold0012 (779-821)||(165818-165860)
[»] scaffold0339 (1 HSPs)
scaffold0339 (794-839)||(15695-15740)


Alignment Details
Target: chr4 (Bit Score: 800; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 800; E-Value: 0
Query Start/End: Original strand, 6 - 1013
Target Start/End: Original strand, 50653207 - 50654217
Alignment:
Q  6 catcatttgcaccatcttctgcaaacttaggatcccctttctccaaagcttcaatagcttgaggtatatcagctatcaaaattgctctatatttgtcacc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50653207 catcatttgcaccatcttctgcaaacttaggatcccctttctccaaagcttcaatagcttgaggtatatcagctatcaaaattgctctatatttgtcacc 50653306  T
Q  106 acaagaactcaaagctttcctagctccatttcccaacctttgtagctgttggatcttatttaatccatcgtttgcttttgctttcatcactttcaccatg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50653307 acaagaactcaaagctttcctagctccatttcccaacctttgtagctggtggatcttatttaatccatcgtttgcttttgctttcatcactttcaccatg 50653406  T
Q  206 atttgcgctagccctgttacatcaccagcagaggtaccagaatatgctttcaaagactgaaaacaaacattgtaatttggtgnnnnnnngcaagtgtttt 305  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  50653407 atttgtgctagccctgttacatcaccagcagaggtaccagaatatgctttcaaagactgaaaacaaacattgtaatttggtgtttttttgcaagtgtttt 50653506  T
Q  306 ctatgagtgatagtttttcatcctttgaagggaaattagtacttctgctttggattgttggtaatgaaattatgataacaatagcttgaaggaataagca 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50653507 ctatgagtgatagtttttcatcctttgaagggaaattagtacttctgctttggattgttggtaatgaaattatgataacaatagcttgaaggaataagca 50653606  T
Q  406 aagagttagaggcttaaaatttgtcattgttaatttgtagctagaaataatgtgctaggccattttata-gggtaggaaaaagttattagaggttgattg 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  50653607 aagagttagaggcttaaaatttgtcattgttaatttgtagctagaaataatgtgctaggccattttataggggtaggaaaaagttattagaggttgattg 50653706  T
Q  505 ttgtctaaaaaatattaaagtacaacttttctt-nnnnnnntgtacaattacatctcatcttttaggattcatatcccttattatattatacgatatcta 603  Q
    |||||| ||||||||||||||||||||||||||        |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50653707 ttgtct-aaaaatattaaagtacaacttttcttaaaaaaaatgtagaattacatgtcatcttttaggattcatatcccttattatattatacgatatcta 50653805  T
Q  604 ccatattgaaccgtattttgctttatatatgattgagtgtgtaaaaaattataaagctgctttgtacatcccatttggtcnnnnnnnnnnnngacttggt 703  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||             |||||||    
T  50653806 ccatattgaaccgtattttgctttatatatgattgagtgtgtaaaaaattataaagctgctttgtatatcccatttggtcaaaaagaaaaaatacttggt 50653905  T
Q  704 acatccccgtcttacaacatagttagtggtttgattatgatgagtatcaaagcctaactcatctttataatacaacttgtacggtgatgagtgtctcttc 803  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||    
T  50653906 acatccccgtcttacaacatagttagtggtttgattgtgatgagtatcaaggcctaactcatctttacaatacaacttgtacggtgatgagtgtatcttc 50654005  T
Q  804 tttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgttagtcactaacggtatctaatatctttttacatgtatcta 903  Q
    ||||||||||||| |||||||  ||||||||  |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50654006 tttataaactcttttcaaaaaaattatatatccgatatgagattaaatctcatcgaatgttagtcactaacggtatctaatatctttttacatgtatcta 50654105  T
Q  904 ctatctgataatttgaaactatactcatatctttttaataatcatattattgggtataaaatattcactaatttttaccaa--gatttaa-tagttgatc 1000  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||   |||||| |||||||||    
T  50654106 ctatctaataatttgaaactatactcgtatctttttaataatcatattatt-ggtataaaatattcactaatttttaccaaagaatttaattagttgatc 50654204  T
Q  1001 ccttttaataagg 1013  Q
     ||||||||||||    
T  50654205 acttttaataagg 50654217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 783 - 874
Target Start/End: Complemental strand, 2016604 - 2016513
Alignment:
Q  783 tacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgttagtcactaac 874  Q
    |||||||| ||||| ||| |||||||||||||||||||| |||| ||| ||| |||| ||||| |||||||| ||||||||| | |||||||    
T  2016604 tacggtgaggagtgcctcctctttataaactcttctcaagaatcctatctatctgatgtgagactaaatcccctcgagtgttggccactaac 2016513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 776 - 830
Target Start/End: Original strand, 52810650 - 52810704
Alignment:
Q  776 caacttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttat 830  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||    
T  52810650 caacttgtacggtgaggagtgtctcctctttataaactcttctcaagaatcttat 52810704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 50635897 - 50636016
Alignment:
Q  3 caacatcatttgcaccatcttctgcaaacttaggatcccctttctccaaagcttcaatagcttgaggtatatcagctatcaaaattgctctatatttgtc 102  Q
    |||||||||||||||||||||||||||| || ||||| |||| || ||||||| ||| || ||  || | |||||||| |||||||||||| ||| |  |    
T  50635897 caacatcatttgcaccatcttctgcaaattttggatctccttgcttcaaagctgcaacagattttggcacatcagctaccaaaattgctctgtatctacc 50635996  T
Q  103 accacaagaactcaaagctt 122  Q
    | |||| ||| |||||||||    
T  50635997 agcacatgaattcaaagctt 50636016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 779 - 864
Target Start/End: Original strand, 46528951 - 46529036
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||||||| ||||| ||| |||||||||||||||||||| ||||  || |||  ||| ||||| ||||||||| ||||||||    
T  46528951 cttgtacggtgaggagtgcctcctctttataaactcttctcaagaatccaatctatccgatgtgagactaaatcccaccgagtgtt 46529036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 786 - 830
Target Start/End: Complemental strand, 5427197 - 5427153
Alignment:
Q  786 ggtgatgagtgtctcttctttataaactcttctcaaaaatcttat 830  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||    
T  5427197 ggtgaggagtgtctcctctttataaactcttctcaaaaatcttat 5427153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 50640992 - 50641108
Alignment:
Q  6 catcatttgcaccatcttctgcaaacttaggatcccctttctccaaagcttcaatagcttgaggtatatcagctatcaaaattgctctatatttgtcacc 105  Q
    ||||||||||||||||||||||||  ||||||||||||| || ||||||| |||| | ||  || | | || ||| |||||||| ||||||| |  || |    
T  50640992 catcatttgcaccatcttctgcaactttaggatccccttgcttcaaagctgcaatggattttggcacaacatctaccaaaattgatctatatctaccagc 50641091  T
Q  106 acaagaactcaaagctt 122  Q
    ||| |||||||||||||    
T  50641092 acatgaactcaaagctt 50641108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 779 - 835
Target Start/End: Original strand, 53738236 - 53738292
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatt 835  Q
    |||||| ||||| ||||||||| |||||||||||||||||||| | |||||| ||||    
T  53738236 cttgtaaggtgacgagtgtctcctctttataaactcttctcaagagtcttatctatt 53738292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 787 - 830
Target Start/End: Complemental strand, 49544400 - 49544357
Alignment:
Q  787 gtgatgagtgtctcttctttataaactcttctcaaaaatcttat 830  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||    
T  49544400 gtgaggagtgtctcctctttataaactcttctcaagaatcttat 49544357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 779 - 821
Target Start/End: Complemental strand, 4645683 - 4645641
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaa 821  Q
    |||||| |||||||| |||||| ||||||||||||||||||||    
T  4645683 cttgtaaggtgatgattgtctcctctttataaactcttctcaa 4645641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 779 - 864
Target Start/End: Original strand, 37288897 - 37288982
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    ||||||||| || ||||||||| | |||||||||||||||||| |||| ||| |||  ||| || || ||||||||| ||| ||||    
T  37288897 cttgtacggcgaagagtgtctcctttttataaactcttctcaagaatcatatctatccgatgtgggactaaatcccaccgattgtt 37288982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 5e-19; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 779 - 864
Target Start/End: Original strand, 16060913 - 16060998
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||  ||| || || ||||||||||||||||||    
T  16060913 cttgtacggtgaagagtgtctcatctttataaactcttctcaagaatattatatatccgatgtgggactaaatcccatcgagtgtt 16060998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 779 - 864
Target Start/End: Original strand, 16051563 - 16051648
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||||||| || |||||| |||||||||||||||||||| ||| |||||||| |||| || || |||||||||| |||||||    
T  16051563 cttgtacggtgaagaatgtctcatctttataaactcttctcaagaatattatatatctgatgtgggactaaatcccattgagtgtt 16051648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 779 - 864
Target Start/End: Original strand, 16045398 - 16045483
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||| ||| ||||||||| | |||||||||||||||||| ||| ||||||||  ||| || || ||||||||||||||||||    
T  16045398 cttgtacgatgaagagtgtctcatatttataaactcttctcaagaatattatatatccgatgtgggactaaatcccatcgagtgtt 16045483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 779 - 835
Target Start/End: Complemental strand, 36020892 - 36020836
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatt 835  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||||||| ||| ||||    
T  36020892 cttgtacggtaatgagtgcctcctctttataaactcttctcaaaaatcatatctatt 36020836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 780 - 834
Target Start/End: Original strand, 16033329 - 16033383
Alignment:
Q  780 ttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatat 834  Q
    ||||||| ||| ||||||||| ||||||| ||||||||| |||||||||||||||    
T  16033329 ttgtacgatgaagagtgtctcatctttatgaactcttctaaaaaatcttatatat 16033383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 779 - 864
Target Start/End: Complemental strand, 9178983 - 9178898
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||| ||||| ||||||||| ||||||||||||||||| || |||| ||| |||  |||||| || ||||| ||| ||||||||    
T  9178983 cttgtaaggtgaagagtgtctcctctttataaactcttcttaagaatcctatctatccgatatgggactaaattccaccgagtgtt 9178898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 779 - 860
Target Start/End: Complemental strand, 9180444 - 9180363
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgag 860  Q
    |||||||||||| ||||||||| |||||||||||| ||||||| |||| ||| |||  ||| || || ||||||| ||||||    
T  9180444 cttgtacggtgaggagtgtctcctctttataaacttttctcaagaatcctatctatccgatgtgggactaaatccgatcgag 9180363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 779 - 855
Target Start/End: Original strand, 15820633 - 15820709
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatccca 855  Q
    |||||||||||| ||||||||| || ||||||||||||||||| |||| ||| |||  ||| || || |||||||||    
T  15820633 cttgtacggtgaggagtgtctcctcgttataaactcttctcaagaatcctatctatccgatgtgggactaaatccca 15820709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 779 - 821
Target Start/End: Original strand, 10450676 - 10450718
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaa 821  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||    
T  10450676 cttgtacggtgaggagtgcctcctctttataaactcttctcaa 10450718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 779 - 821
Target Start/End: Original strand, 11244569 - 11244611
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaa 821  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||    
T  11244569 cttgtacggtgaggagtgcctcctctttataaactcttctcaa 11244611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 779 - 821
Target Start/End: Original strand, 48511667 - 48511709
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaa 821  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||    
T  48511667 cttgtacggtgaggagtgcctcctctttataaactcttctcaa 48511709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 779 - 864
Target Start/End: Complemental strand, 24453854 - 24453769
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||||||| ||||| ||| | |||||||||||||||||| || | ||| |||  ||| || || |||||||| |||||||||    
T  24453854 cttgtacggtgaggagtgcctcctgtttataaactcttctcaagaaccctatctatccgatgtgggactaaatcccctcgagtgtt 24453769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 5e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 779 - 864
Target Start/End: Complemental strand, 10862382 - 10862297
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||  ||| || || |||||||| |||||||||    
T  10862382 cttgtacggtgatgagtgtctcctctttataaactcttctaaaaaatcttatctatccgatgtgggactaaatcccctcgagtgtt 10862297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 779 - 874
Target Start/End: Original strand, 44266336 - 44266431
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgttagtcactaac 874  Q
    |||||| | ||||||||||||| ||||||||||||||||||||||||||||| ||| |||| || || |||||||| |||| |||| | |||||||    
T  44266336 cttgtatgatgatgagtgtctcctctttataaactcttctcaaaaatcttatctatctgatgtgggactaaatcccctcgaatgttggccactaac 44266431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 778 - 864
Target Start/End: Complemental strand, 14288998 - 14288912
Alignment:
Q  778 acttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| |||| ||| |||  || ||| || ||||||||||||| ||||    
T  14288998 acttgtacggtgaggagtgtctcctctttataaactcttctcaagaatcatatttatccgacatgggactaaatcccatcgaatgtt 14288912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 779 - 864
Target Start/End: Original strand, 10861862 - 10861947
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||||||| ||||| ||| |||||||||||||||||||| |||| |||||||   ||||| || |||||||| |||||||||    
T  10861862 cttgtacggtgaggagtgcctcctctttataaactcttctcaagaatcctatatatccaatatgggactaaatcccctcgagtgtt 10861947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 779 - 864
Target Start/End: Original strand, 10862086 - 10862171
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||||||||||||| ||| |||||||||||||||||||| |||| ||| |||  ||| || || |||||||| |||||||||    
T  10862086 cttgtacggtgatgagtgcctcctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccctcgagtgtt 10862171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 779 - 874
Target Start/End: Original strand, 33532764 - 33532859
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgttagtcactaac 874  Q
    |||||||||||| ||||| ||| |||||||||||||||||||| |||| ||| |||  ||| || || |||||||| ||||||||| | |||||||    
T  33532764 cttgtacggtgaggagtgcctcctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccctcgagtgttggccactaac 33532859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 755 - 864
Target Start/End: Original strand, 28193338 - 28193448
Alignment:
Q  755 gcctaactcatctttataata-caacttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcc 853  Q
    |||||||||||||||| || | |  |||||||||||| ||||| ||| | |||||||||||||||||| |||| ||| |||  ||| ||||| |||||||    
T  28193338 gcctaactcatctttaaaaaatcggcttgtacggtgaggagtgcctcctatttataaactcttctcaagaatcctatctatccgatgtgagactaaatcc 28193437  T
Q  854 catcgagtgtt 864  Q
    | |||||||||    
T  28193438 cctcgagtgtt 28193448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 778 - 864
Target Start/End: Original strand, 28193602 - 28193688
Alignment:
Q  778 acttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    ||||||||||||| ||||| ||| |||||||||| ||||||||| |||| ||| ||| |||| || || |||||||| |||||||||    
T  28193602 acttgtacggtgaggagtgcctcctctttataaaatcttctcaagaatcctatctatctgatgtgggactaaatcccctcgagtgtt 28193688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 779 - 855
Target Start/End: Complemental strand, 936888 - 936812
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatccca 855  Q
    |||||||||||| ||||||||| |||||||||||||||||||| | || ||| |||  ||| ||||| |||||||||    
T  936888 cttgtacggtgaggagtgtctcctctttataaactcttctcaagattcctatctatccgatgtgagactaaatccca 936812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 778 - 864
Target Start/End: Complemental strand, 32197279 - 32197193
Alignment:
Q  778 acttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    ||||||||||| ||||||||||  |||||||||| |||| || | |||| |||||||  ||| || || ||||||||||||||||||    
T  32197279 acttgtacggtaatgagtgtcttctctttataaattcttttcgagaatcctatatataagatgtgggactaaatcccatcgagtgtt 32197193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 785 - 830
Target Start/End: Complemental strand, 14289196 - 14289151
Alignment:
Q  785 cggtgatgagtgtctcttctttataaactcttctcaaaaatcttat 830  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||    
T  14289196 cggtgatgaatgtctcctctttataaactcttctcaagaatcttat 14289151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 755 - 830
Target Start/End: Complemental strand, 31761233 - 31761157
Alignment:
Q  755 gcctaactcatctttataatac-aacttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttat 830  Q
    |||||||||||| ||| || || |||||||| ||||| || || ||||||| |||||||||||||||||| ||||||    
T  31761233 gcctaactcatccttacaaaaccaacttgtaaggtgaggattgcctcttctatataaactcttctcaaaagtcttat 31761157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 792 - 839
Target Start/End: Complemental strand, 5721594 - 5721547
Alignment:
Q  792 gagtgtctcttctttataaactcttctcaaaaatcttatatatttgat 839  Q
    ||||||||||||||||||||||||| | ||||||||||| ||| ||||    
T  5721594 gagtgtctcttctttataaactcttataaaaaatcttatctatatgat 5721547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 755 - 853
Target Start/End: Complemental strand, 29780248 - 29780149
Alignment:
Q  755 gcctaactcatctttataataca-acttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcc 853  Q
    |||||||||||| |||||| ||  ||||||| ||||| ||||||||| |||||||||||||||||||| | || ||| |||||||| ||||| |||||||    
T  29780248 gcctaactcatccttataaaaccgacttgtaaggtgaggagtgtctcctctttataaactcttctcaagagtcatatctatttgatgtgagactaaatcc 29780149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 779 - 864
Target Start/End: Original strand, 36270498 - 36270583
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||||||| ||||||||| ||||||||||||| |||||| |||| ||| |||  ||| || || ||||||||| ||||||||    
T  36270498 cttgtacggtgaggagtgtctcctctttataaactcgtctcaagaatcctatctatccgatgtgggactaaatcccaccgagtgtt 36270583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 779 - 864
Target Start/End: Original strand, 39550006 - 39550091
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    ||||||| |||||||||| ||| |||||||||||||||||||| |||| ||| |||  ||| || || ||||||||| ||||||||    
T  39550006 cttgtacagtgatgagtgcctcctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccaccgagtgtt 39550091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 779 - 864
Target Start/End: Original strand, 22686759 - 22686846
Alignment:
Q  779 cttgtacggtgatgagtgtctct--tctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||||||| ||||||||||  ||||||||||||||| |||| |||| ||| |||  ||| || ||||||||||| |||||||||    
T  22686759 cttgtacggtgaggagtgtctctcctctttataaactcttttcaagaatcctatttatccgatgtgggattaaatcccctcgagtgtt 22686846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 779 - 864
Target Start/End: Complemental strand, 19843783 - 19843698
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||||||| |||||  |  |||||||||||||||||||| |||| ||| ||| |||| || || |||||||| |||||||||    
T  19843783 cttgtacggtgaggagtgctttctctttataaactcttctcaagaatcctatctatctgatttgggactaaatcccttcgagtgtt 19843698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 778 - 818
Target Start/End: Complemental strand, 11469706 - 11469666
Alignment:
Q  778 acttgtacggtgatgagtgtctcttctttataaactcttct 818  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  11469706 acttgtaaggtaatgagtgtctcttctttataaactcttct 11469666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 778 - 826
Target Start/End: Original strand, 14991536 - 14991584
Alignment:
Q  778 acttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatc 826  Q
    ||||||||||||| ||||| ||| |||||||||||||||||||| ||||    
T  14991536 acttgtacggtgaggagtgcctcctctttataaactcttctcaagaatc 14991584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 778 - 826
Target Start/End: Original strand, 15421147 - 15421195
Alignment:
Q  778 acttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatc 826  Q
    ||||||||||||| ||||| ||| |||||||||||||||||||| ||||    
T  15421147 acttgtacggtgaggagtgcctcctctttataaactcttctcaagaatc 15421195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 779 - 855
Target Start/End: Original strand, 47346122 - 47346198
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatccca 855  Q
    |||||||||||| ||||| ||| |||||||||||||||||||| | || ||| ||| |||| || || |||||||||    
T  47346122 cttgtacggtgaggagtgcctcctctttataaactcttctcaagattcctatctatctgatgtgggactaaatccca 47346198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 780 - 862
Target Start/End: Original strand, 22206307 - 22206389
Alignment:
Q  780 ttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtg 862  Q
    ||||| ||||| ||||| ||| |||||||||||| ||||||| |||| ||| |||| ||| || || ||||||||| ||||||    
T  22206307 ttgtatggtgaggagtgcctcctctttataaacttttctcaagaatcctatctattcgatgtgggactaaatcccaccgagtg 22206389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 780 - 862
Target Start/End: Complemental strand, 22228432 - 22228350
Alignment:
Q  780 ttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtg 862  Q
    ||||| ||||| ||||| ||| |||||||||||| ||||||| |||| ||| |||| ||| || || ||||||||| ||||||    
T  22228432 ttgtatggtgaggagtgcctcctctttataaacttttctcaagaatcctatctattcgatgtgggactaaatcccaccgagtg 22228350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 779 - 821
Target Start/End: Complemental strand, 33909382 - 33909340
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaa 821  Q
    ||||||| |||| ||||||||| ||||||||||||||||||||    
T  33909382 cttgtacagtgaggagtgtctcctctttataaactcttctcaa 33909340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 779 - 821
Target Start/End: Original strand, 37755966 - 37756008
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaa 821  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||    
T  37755966 cttgtacggtgaagagtgcctcctctttataaactcttctcaa 37756008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 779 - 821
Target Start/End: Original strand, 37756192 - 37756234
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaa 821  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||    
T  37756192 cttgtacggtgaagagtgcctcctctttataaactcttctcaa 37756234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 779 - 821
Target Start/End: Original strand, 37761940 - 37761982
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaa 821  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||    
T  37761940 cttgtacggtgaagagtgcctcctctttataaactcttctcaa 37761982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 779 - 821
Target Start/End: Original strand, 40121967 - 40122009
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaa 821  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||    
T  40121967 cttgtagggtgaggagtgtctcctctttataaactcttctcaa 40122009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 779 - 821
Target Start/End: Original strand, 47346351 - 47346393
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaa 821  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||    
T  47346351 cttgtacggtgaggagtgcctcctctttataaactcttctcaa 47346393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 779 - 864
Target Start/End: Original strand, 14769860 - 14769945
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||||||| ||||||||| |||||||||||||||||||| |||| ||| |||  ||| ||||| |||||||  |||||||||    
T  14769860 cttgtacggtgaggagtgtctcgtctttataaactcttctcaagaatcctatctatccgatgtgagactaaatccactcgagtgtt 14769945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 779 - 864
Target Start/End: Complemental strand, 19439936 - 19439851
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||||||| ||||||||| |||||||||| ||||||||| |||| ||| ||| |||| || || |||||||| |||||||||    
T  19439936 cttgtacggtgaggagtgtctcctctttataaattcttctcaagaatcctatctatctgatgtgggactaaatcccctcgagtgtt 19439851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 779 - 864
Target Start/End: Original strand, 22196581 - 22196666
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||||||||||||||||| |||||||||||||||||||| | || ||| |||  ||| || || ||||||||| ||||||||    
T  22196581 cttgtacggtgatgagtgtctcctctttataaactcttctcaagagtcatatctatccgatgtgggactaaatcccaccgagtgtt 22196666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 779 - 864
Target Start/End: Original strand, 2471721 - 2471806
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||||| | ||| |||  ||| || || |||||||| |||||||||    
T  2471721 cttgtacggtgaggagtgcctcctctttataaactcttctcaaaaaccctatctatccgatgtgggactaaatcccctcgagtgtt 2471806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 779 - 855
Target Start/End: Original strand, 84062 - 84138
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatccca 855  Q
    |||||||||||| ||||| ||| |||||||||||||||||||| |||| |||||||  ||| || || |||||||||    
T  84062 cttgtacggtgaggagtgcctcctctttataaactcttctcaagaatcctatatatccgatgtgggactaaatccca 84138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 779 - 835
Target Start/End: Original strand, 27429573 - 27429628
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatt 835  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||||||| ||| ||||    
T  27429573 cttgtacggtgaggagtgtctcatctttataaactc-tctcaaaaatcatatttatt 27429628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 779 - 855
Target Start/End: Complemental strand, 33040139 - 33040063
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatccca 855  Q
    |||||| ||||| ||||| ||| ||| ||||||||||| |||| |||| |||||||| ||| ||||| |||||||||    
T  33040139 cttgtaaggtgaggagtgcctcctctatataaactcttttcaagaatcctatatattcgatgtgagactaaatccca 33040063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 797 - 846
Target Start/End: Complemental strand, 33590804 - 33590755
Alignment:
Q  797 tctcttctttataaactcttctcaaaaatcttatatatttgatatgagat 846  Q
    ||||||||||||||||| || | |||| |||||||||||| |||||||||    
T  33590804 tctcttctttataaacttttataaaaagtcttatatatttaatatgagat 33590755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 802 - 874
Target Start/End: Original strand, 9596270 - 9596342
Alignment:
Q  802 tctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgttagtcactaac 874  Q
    |||||||||||||||||||| |||||||| |||  ||||||||| ||||||||| |||||||| | |||||||    
T  9596270 tctttataaactcttctcaagaatcttatctatccgatatgagactaaatcccaccgagtgttggccactaac 9596342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 755 - 864
Target Start/End: Complemental strand, 15711597 - 15711487
Alignment:
Q  755 gcctaactcatctttataatacaa-cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcc 853  Q
    ||||||||||||  ||||| |||  |||||||||||| ||||| ||| |||||||||||||||||||| |||| ||| |||  ||| || || |||||||    
T  15711597 gcctaactcatccctataaaacaggcttgtacggtgaggagtgcctcctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatcc 15711498  T
Q  854 catcgagtgtt 864  Q
    || ||||||||    
T  15711497 caccgagtgtt 15711487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 779 - 836
Target Start/End: Original strand, 38287992 - 38288049
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatattt 836  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||||| ||| |||||    
T  38287992 cttgtacggtgagtagtgtctcctctttataaactcttctcaaaaatcctatctattt 38288049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 793 - 853
Target Start/End: Complemental strand, 8452844 - 8452784
Alignment:
Q  793 agtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcc 853  Q
    |||||||| |||||||||| | |||||||||||| ||| ||||| ||||||||||||||||    
T  8452844 agtgtctcctctttataaatttttctcaaaaatcctatctatttaatatgagattaaatcc 8452784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 779 - 855
Target Start/End: Complemental strand, 18464146 - 18464070
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatccca 855  Q
    |||||||||||| ||||| ||  |||||||||||||||||||| |||| ||| ||| |||| || || |||||||||    
T  18464146 cttgtacggtgaggagtgccttctctttataaactcttctcaagaatcctatctatctgatgtgggactaaatccca 18464070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 779 - 864
Target Start/End: Original strand, 17607242 - 17607327
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    ||||||||||||  |||| ||| |||||||||||||||| ||| |||| ||| |||  ||| ||||| |||||||  |||||||||    
T  17607242 cttgtacggtgagtagtgcctcctctttataaactcttcacaagaatcctatctatccgatgtgagactaaatccactcgagtgtt 17607327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 778 - 834
Target Start/End: Complemental strand, 8427627 - 8427571
Alignment:
Q  778 acttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatat 834  Q
    ||||||||||||| ||||| ||| ||||| |||||||||||||| ||||||||||||    
T  8427627 acttgtacggtgaggagtgcctcctctttctaaactcttctcaagaatcttatatat 8427571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 780 - 864
Target Start/End: Complemental strand, 13673930 - 13673846
Alignment:
Q  780 ttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    ||||||||||||||| ||||| || ||||||||||||||||| || | ||| ||| |||| ||||||||||| |||  |||||||    
T  13673930 ttgtacggtgatgagggtctcctcattataaactcttctcaagaaacctatctatctgatgtgagattaaattccactgagtgtt 13673846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 780 - 839
Target Start/End: Original strand, 27443566 - 27443625
Alignment:
Q  780 ttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgat 839  Q
    ||||||||||| |||||| || |||||||||||||||||||| |||| ||| ||| ||||    
T  27443566 ttgtacggtgaggagtgtttcctctttataaactcttctcaagaatcctatctatctgat 27443625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 779 - 821
Target Start/End: Original strand, 10733466 - 10733508
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaa 821  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||    
T  10733466 cttgtaaggtgaggagtgtctcctctttataaactcttctcaa 10733508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 779 - 821
Target Start/End: Complemental strand, 26842796 - 26842754
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaa 821  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||    
T  26842796 cttgtacggtgaggagtgcctcctctttataaactcttctcaa 26842754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 779 - 852
Target Start/End: Original strand, 17096726 - 17096799
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatc 852  Q
    ||||||||| || |||| |||| |||||||||||||||||||| | || ||| |||| ||| ||||| ||||||    
T  17096726 cttgtacggcgaggagtttctcctctttataaactcttctcaagactcctatctattcgatgtgagactaaatc 17096799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 755 - 826
Target Start/End: Complemental strand, 45858756 - 45858684
Alignment:
Q  755 gcctaactcatctttataataca-acttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatc 826  Q
    |||||||||||| |||||| ||  ||||||||||||| ||||| ||| |||||||||||||||||||| ||||    
T  45858756 gcctaactcatccttataaaaccgacttgtacggtgaggagtgcctcctctttataaactcttctcaagaatc 45858684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 780 - 864
Target Start/End: Original strand, 40521521 - 40521606
Alignment:
Q  780 ttgtacggtgatgagtgtctct-tctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    ||||||||||| |||||||||  |||||||||||||||||||| |||||||| |||  ||| || || |||||| | |||||||||    
T  40521521 ttgtacggtgaagagtgtctccctctttataaactcttctcaagaatcttatctatccgatgtgggactaaatcacctcgagtgtt 40521606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 779 - 864
Target Start/End: Complemental strand, 45443296 - 45443211
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||||| | ||||| ||| |||||||||||||||||||| |||| ||| |||  ||| || || ||||||||| ||||||||    
T  45443296 cttgtacggttaggagtgcctcatctttataaactcttctcaagaatcctatctatccgatgtgggactaaatcccaccgagtgtt 45443211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 755 - 874
Target Start/End: Complemental strand, 12287949 - 12287829
Alignment:
Q  755 gcctaactcatctttataatacaa-cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcc 853  Q
    |||||||||||| ||| || || | |||||||||||| ||||| ||| ||||||||| ||||| |||| |||| ||| |||  ||| || || |||||||    
T  12287949 gcctaactcatccttacaaaaccagcttgtacggtgaggagtgcctcctctttataacctcttttcaagaatcctatctatccgatgtgggactaaatcc 12287850  T
Q  854 catcgagtgttagtcactaac 874  Q
    || |||||||| | |||||||    
T  12287849 caccgagtgttggccactaac 12287829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 779 - 855
Target Start/End: Complemental strand, 17295054 - 17294978
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatccca 855  Q
    |||||||||||| ||||| ||| |||||||||||||||||||| |||| ||| |||  ||| || || |||||||||    
T  17295054 cttgtacggtgaggagtgcctcctctttataaactcttctcaagaatcctatctatccgatgtgggactaaatccca 17294978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 779 - 826
Target Start/End: Original strand, 27958075 - 27958122
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatc 826  Q
    |||||||||||| ||||| ||| |||||||||||||||||||| ||||    
T  27958075 cttgtacggtgaggagtgcctcctctttataaactcttctcaagaatc 27958122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 779 - 821
Target Start/End: Original strand, 8520121 - 8520163
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaa 821  Q
    |||||| ||||| ||||| ||||||||||||||||||||||||    
T  8520121 cttgtaaggtgaggagtgcctcttctttataaactcttctcaa 8520163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 780 - 830
Target Start/End: Original strand, 28950947 - 28950997
Alignment:
Q  780 ttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttat 830  Q
    |||||||||||  ||| |||| |||||||||||||||||||| ||||||||    
T  28950947 ttgtacggtgagaagtatctcctctttataaactcttctcaagaatcttat 28950997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 779 - 821
Target Start/End: Complemental strand, 29228524 - 29228482
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaa 821  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||    
T  29228524 cttgtacggtgaggagtgcctcctctttataaactcttctcaa 29228482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 779 - 864
Target Start/End: Complemental strand, 18585114 - 18585029
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgatatgagattaaatcccatcgagtgtt 864  Q
    |||||||||||| ||||  ||| |||||||||| ||||||||| |||| ||| |||  ||| || || ||||||||| ||||||||    
T  18585114 cttgtacggtgaggagtccctcctctttataaaatcttctcaagaatcctatctatccgatgtgggactaaatcccaccgagtgtt 18585029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 755 - 823
Target Start/End: Complemental strand, 45403541 - 45403472
Alignment:
Q  755 gcctaactcatctttataatacaa-cttgtacggtgatgagtgtctcttctttataaactcttctcaaaa 823  Q
    |||||||||||| ||| || || | |||||| ||||| ||||| ||| ||||||||||||||||||||||    
T  45403541 gcctaactcatccttacaaaaccagcttgtaaggtgaggagtgcctcctctttataaactcttctcaaaa 45403472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 755 - 825
Target Start/End: Original strand, 3123 - 3194
Alignment:
Q  755 gcctaactcatctttataatacaa-cttgtacggtgatgagtgtctcttctttataaactcttctcaaaaat 825  Q
    |||||||||||| |||||| || | ||| || ||||| ||||||||| ||||||||||||||||||||||||    
T  3123 gcctaactcatccttataaaaccagcttctatggtgaggagtgtctcctctttataaactcttctcaaaaat 3194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 780 - 839
Target Start/End: Complemental strand, 43795 - 43736
Alignment:
Q  780 ttgtacggtgatgagtgtctcttctttataaactcttctcaaaaatcttatatatttgat 839  Q
    ||||||||||| |||||| || |||||||||||||||||||| |||| ||| ||| ||||    
T  43795 ttgtacggtgaggagtgtttcctctttataaactcttctcaagaatcctatctatctgat 43736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 779 - 821
Target Start/End: Complemental strand, 165860 - 165818
Alignment:
Q  779 cttgtacggtgatgagtgtctcttctttataaactcttctcaa 821  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||    
T  165860 cttgtacggtgaagagtgcctcctctttataaactcttctcaa 165818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 794 - 839
Target Start/End: Original strand, 15695 - 15740
Alignment:
Q  794 gtgtctcttctttataaactcttctcaaaaatcttatatatttgat 839  Q
    ||||||| | ||||||||||||| ||||||||||||| ||||||||    
T  15695 gtgtctcctatttataaactcttatcaaaaatcttatctatttgat 15740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University