View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5779-Insertion-2 (Length: 1093)

Name: NF5779-Insertion-2
Description: NF5779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5779-Insertion-2
NF5779-Insertion-2
[»] chr4 (8 HSPs)
chr4 (437-1058)||(32159683-32160308)
chr4 (26-457)||(32160311-32160743)
chr4 (349-457)||(32160987-32161095)
chr4 (389-457)||(8538360-8538428)
chr4 (385-450)||(23655297-23655362)
chr4 (385-457)||(11789859-11789931)
chr4 (385-450)||(19075749-19075814)
chr4 (385-450)||(54316058-54316123)
[»] chr2 (8 HSPs)
chr2 (335-461)||(17737482-17737608)
chr2 (338-458)||(17736977-17737097)
chr2 (385-457)||(17200078-17200150)
chr2 (385-458)||(4371453-4371526)
chr2 (385-457)||(22563210-22563282)
chr2 (385-457)||(22563439-22563511)
chr2 (385-429)||(32222055-32222099)
chr2 (383-458)||(34645773-34645848)
[»] scaffold0417 (2 HSPs)
scaffold0417 (348-460)||(9268-9380)
scaffold0417 (335-429)||(8898-8992)
[»] chr3 (9 HSPs)
chr3 (348-454)||(35274444-35274550)
chr3 (385-457)||(8799317-8799389)
chr3 (385-429)||(8799545-8799589)
chr3 (385-452)||(10696500-10696568)
chr3 (385-457)||(38499819-38499891)
chr3 (385-456)||(4041412-4041483)
chr3 (388-458)||(38500053-38500123)
chr3 (389-454)||(43797585-43797650)
chr3 (385-450)||(53197212-53197277)
[»] chr5 (6 HSPs)
chr5 (320-455)||(43449469-43449604)
chr5 (360-457)||(43450122-43450219)
chr5 (385-457)||(17370067-17370139)
chr5 (389-457)||(5984473-5984542)
chr5 (385-457)||(31193965-31194037)
chr5 (385-457)||(31194194-31194266)
[»] chr8 (7 HSPs)
chr8 (348-429)||(43598073-43598154)
chr8 (385-457)||(6911029-6911101)
chr8 (385-450)||(8489380-8489445)
chr8 (385-457)||(15009087-15009159)
chr8 (411-457)||(27926319-27926365)
chr8 (404-458)||(43598003-43598057)
chr8 (385-458)||(14999170-14999243)
[»] chr6 (3 HSPs)
chr6 (351-454)||(24197686-24197789)
chr6 (360-457)||(24198338-24198435)
chr6 (389-429)||(24194981-24195021)
[»] chr7 (11 HSPs)
chr7 (387-458)||(48737256-48737327)
chr7 (348-458)||(9905700-9905810)
chr7 (387-457)||(48737933-48738003)
chr7 (389-458)||(39983870-39983939)
chr7 (385-457)||(19318377-19318449)
chr7 (389-457)||(19318452-19318520)
chr7 (389-444)||(28547498-28547553)
chr7 (411-457)||(9905208-9905254)
chr7 (389-458)||(25048257-25048326)
chr7 (385-430)||(35207205-35207250)
chr7 (385-457)||(46582492-46582565)
[»] chr1 (2 HSPs)
chr1 (388-457)||(3385543-3385612)
chr1 (385-458)||(24883197-24883270)


Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 437 - 1058
Target Start/End: Complemental strand, 32160308 - 32159683
Alignment:
Q  437 aaatggagcatacctgaactcccaagaaatgattctagacttatctacttgtatgtctaaatattctcttgtacttgccatttgtcatcgaacaaattgt 536  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32160308 aaatggagcatacctgaactcccaagaaatgattctagagttatctacttgtatgtataaatattctcttgtacttgccatttgtcatcgaacaaattgt 32160209  T
Q  537 gagtttatcttagaaatactactcttcctctaacaaagtggtatcaaagcttggttgtgagatttaagagatggaaagtcttcactaactaattttcacg 636  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  32160208 gagtttatcttagaaatactgctcttcctctaaagaagtggtatcaaagcttggttgtgagatttaagagatggaaagtcttcgctaactaatttccacg 32160109  T
Q  637 ttcctcttattacaaaaggcaactcatttaaaaggtcactaacacaaccttaattcacttcggtaggtgaaatattgctcacttagcgaatctactcttc 736  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  32160108 ttcctcttattacaaaaggcaactcatttaaaaggtcactaacacaaccttaattcacttcggtacgtgaaatattgctcacttagcgaatctgctcttc 32160009  T
Q  737 cattttcctaggaactcctctctttaacaaccaaataaatcttcctgtccgaaaacatctgaaactctcccttacctcacttctagctccctttgctcgc 836  Q
    |||||||||  ||||||||||||||  ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  32160008 cattttcctgagaactcctctctttgccaaccaaataaatcttcctgtccgaaaacctttgaaactctcccttacctcacttctagctccctttgctcgc 32159909  T
Q  837 gtagcgaattagtcatacgacagaactttaggtatttgtaatatcttcagcaaaggcctaaaaaattgaaatgaaataggtaatagtagcttatctagca 936  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  32159908 gtagcgaattagtcatacgacagaactttaggtatttgtaatatcttcggcaaagacctaaaaatttgaaatgaaataggtaatagtagcttatctagca 32159809  T
Q  937 taataaatataaatattaagtctttaacatgatactcagaggtttt-cttagaattacttgcaaaacaagtta--tagggtcatg-ataaaatgcaa-tt 1031  Q
    ||||||||||||||||||||| ||| |||||||||| |||| |||| ||||| ||||||||||||||||||||   ||||||||| ||||||||||| ||    
T  32159808 taataaatataaatattaagtattt-acatgatactaagagtttttccttag-attacttgcaaaacaagttaataagggtcatgaataaaatgcaattt 32159711  T
Q  1032 atcataaattt-gcagttatcacatggt 1058  Q
    ||||||||||| ||||||||||||||||    
T  32159710 atcataaatttggcagttatcacatggt 32159683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 26 - 457
Target Start/End: Complemental strand, 32160743 - 32160311
Alignment:
Q  26 aattaaattagat-taaaaaatgcaagaaaatagtctgcagtagttttgaaatgatgaattttacagagattaaaacttcctgggaatattcatccctaa 124  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32160743 aattaaattagatctaaaaaatgcaagaaaatagtctgcagtagttttgaaatgatgaattttacagatattaaaacttcctgggaatattcatccctaa 32160644  T
Q  125 ttacaaaaattgatgtgtggattatgagagatgggagagattattaactgagcgtgaaatgattaaaaggggaggcgattacataaatgattaactaagc 224  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  32160643 ttacaaaaattgatgtgtgaattatgagagatgggagagattattaactgagcgtgaaatgattaaaaggggaggcgattacataaatgattaactgagt 32160544  T
Q  225 atgattggggaggcgatgggcagctgtgggtggtggtgggtggaggttgacggtgatgagagatgggagagaaacacgtgaaaggagaagacaagataag 324  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  32160543 atgattggggaggtgatgggcggctgtgggtggtggtgggtggaggctgacggtgatgagagatgggaaagaaacacatgaaaggagaagacaagataag 32160444  T
Q  325 ctgagggcaatgctttgtttttaatttttattaaataaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatggactaaat 424  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32160443 ctgagggcagtgctttgtttttaatttttattaaataaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatggactaaat 32160344  T
Q  425 ggagctatacataaatggagcatacctgaactc 457  Q
    || |||||||||||||| |||||||||||||||    
T  32160343 ggggctatacataaatgaagcatacctgaactc 32160311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 349 - 457
Target Start/End: Original strand, 32160987 - 32161095
Alignment:
Q  349 tttttattaaataaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcata 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| | |||||||||||||| |||||||||||||||||||||||    
T  32160987 tttttattaaataaatctcaacccttaaaattaatcttgccacatgtcttctatctaaaacttaaatggactaaatagagctatacataaatggagcata 32161086  T
Q  449 cctgaactc 457  Q
    ||| |||||    
T  32161087 cctaaactc 32161095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 389 - 457
Target Start/End: Original strand, 8538360 - 8538428
Alignment:
Q  389 cacatgtctttcatctaaagcctaaatggactaaatggagct-atacataaatggagcatacctgaactc 457  Q
    |||||||||| |||| ||| |||||||||||||||||||||| |||| ||||||||||||||||| ||||    
T  8538360 cacatgtcttgcatccaaaccctaaatggactaaatggagctaatac-taaatggagcatacctggactc 8538428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 385 - 450
Target Start/End: Original strand, 23655297 - 23655362
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacc 450  Q
    |||||||||||||| |||||||| |||||||||| |||||| ||||  || |||||||||||||||    
T  23655297 ttgccacatgtcttgcatctaaaccctaaatggaataaatgaagcttaacctaaatggagcatacc 23655362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 385 - 457
Target Start/End: Complemental strand, 11789931 - 11789859
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    ||||||||| |||| |||||||| |||||||||| |||||| |||| | | ||||||||||||||| ||||||    
T  11789931 ttgccacatatcttgcatctaaaccctaaatggagtaaatgaagctttgcctaaatggagcatacccgaactc 11789859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 385 - 450
Target Start/End: Original strand, 19075749 - 19075814
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacc 450  Q
    ||||||||||||||||||| ||  |||||||||||||||||||||   || ||||||||| |||||    
T  19075749 ttgccacatgtctttcatccaattcctaaatggactaaatggagcatcacctaaatggagaatacc 19075814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 385 - 450
Target Start/End: Original strand, 54316058 - 54316123
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacc 450  Q
    |||||||||||||| |||| ||| |||||||||| ||||| |||||   | |||||||||||||||    
T  54316058 ttgccacatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaatggagcatacc 54316123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 3e-29; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 335 - 461
Target Start/End: Original strand, 17737482 - 17737608
Alignment:
Q  335 tgctttgtttttaatttttattaaataaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatggactaaatggagctatac 434  Q
    |||||||| |||  ||||||||||||||||||||||| ||||| ||||| |||| |||||||||||||  ||| |||||||||| ||||||||||  |||    
T  17737482 tgctttgtattttgtttttattaaataaatctcaacctttaaatttaattttgctacatgtctttcattcaaaacctaaatggattaaatggagcattac 17737581  T
Q  435 ataaatggagcatacctgaactcccaa 461  Q
     |||||||||||||||||||| |||||    
T  17737582 ctaaatggagcatacctgaacccccaa 17737608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 338 - 458
Target Start/End: Complemental strand, 17737097 - 17736977
Alignment:
Q  338 tttgtttttaatttttattaaataaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacata 437  Q
    ||||| ||| |||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |  ||||||||||||| ||    ||| ||    
T  17737097 tttgtattttatttttattaaataaatctcaacccttaaattgaattttgccacatgtctttcatctaaaactaaaatggactaaatagaatattaccta 17736998  T
Q  438 aatggagcatacctgaactcc 458  Q
    |||||||||||||||||||||    
T  17736997 aatggagcatacctgaactcc 17736977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 385 - 457
Target Start/End: Complemental strand, 17200150 - 17200078
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    |||||||||||||| |||| ||| |||||||||| ||||||||||| | | ||||||||||||||| ||||||    
T  17200150 ttgccacatgtcttacatccaaatcctaaatggagtaaatggagctttgcctaaatggagcatacccgaactc 17200078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 385 - 458
Target Start/End: Complemental strand, 4371526 - 4371453
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactcc 458  Q
    |||||||||||||| |||| ||| |||||||||| |||||||||||   | ||||||||||||||| |||||||    
T  4371526 ttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactcc 4371453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 385 - 457
Target Start/End: Complemental strand, 22563282 - 22563210
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    |||||||||||||| |||| ||| |||||||||| |||||||||||   | ||||||||||||||| ||||||    
T  22563282 ttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 22563210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 385 - 457
Target Start/End: Original strand, 22563439 - 22563511
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    |||||||||||||| |||| ||| |||||||||| ||||||||| |   | ||||||||||||||| ||||||    
T  22563439 ttgccacatgtcttgcatccaaatcctaaatggagtaaatggagtttagcctaaatggagcatacccgaactc 22563511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 32222099 - 32222055
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagc 429  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||    
T  32222099 ttgccacatgtcttgcatctaaatcctaaatggattaaatggagc 32222055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 383 - 458
Target Start/End: Original strand, 34645773 - 34645848
Alignment:
Q  383 tcttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactcc 458  Q
    |||||||||||||||| |||| ||| |||||||||| ||||||||| ||  | ||||||||  ||||| |||||||    
T  34645773 tcttgccacatgtcttacatccaaaccctaaatggaataaatggagttaagcctaaatggaatatacccgaactcc 34645848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 65; Significance: 5e-28; HSPs: 2)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 348 - 460
Target Start/End: Original strand, 9268 - 9380
Alignment:
Q  348 atttttattaaataaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcat 447  Q
    ||||| ||||||||||||||||||||| || ||||| |||||||||||||| ||||  |||| |||||||| |||||||||| | || ||||||||||||    
T  9268 attttaattaaataaatctcaacccttgaatttaattttgccacatgtcttccatccgaagcttaaatggattaaatggagcaaaacctaaatggagcat 9367  T
Q  448 acctgaactccca 460  Q
    |||||||||||||    
T  9368 acctgaactccca 9380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 335 - 429
Target Start/End: Complemental strand, 8992 - 8898
Alignment:
Q  335 tgctttgtttttaatttttattaaataaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatggactaaatggagc 429  Q
    |||||||| ||| ||||| ||||||||||||||||||||| || ||||| |||||||||||||| ||||| |||| |||||||| ||||||||||    
T  8992 tgctttgtattttattttaattaaataaatctcaacccttgaatttaattttgccacatgtcttccatctgaagcttaaatggattaaatggagc 8898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 5e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 348 - 454
Target Start/End: Complemental strand, 35274550 - 35274444
Alignment:
Q  348 atttttattaaataaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcat 447  Q
    ||||| ||||||||||||||||||||| || |||||  ||||||||||||| |||| ||||  ||||||||||||||||| |  ||| ||||||||||||    
T  35274550 attttaattaaataaatctcaacccttgaatttaattatgccacatgtcttccatccaaagtttaaatggactaaatggaacattacctaaatggagcat 35274451  T
Q  448 acctgaa 454  Q
    |||||||    
T  35274450 acctgaa 35274444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 385 - 457
Target Start/End: Complemental strand, 8799389 - 8799317
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    |||||||||||||| |||| ||| |||||||||| ||||||||||    | ||||||||||||||| ||||||    
T  8799389 ttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcctagcctaaatggagcatacccgaactc 8799317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 385 - 429
Target Start/End: Original strand, 8799545 - 8799589
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagc 429  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||    
T  8799545 ttgccacatgtcttgcatctaaaccctaaatggagtaaatggagc 8799589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 385 - 452
Target Start/End: Complemental strand, 10696568 - 10696500
Alignment:
Q  385 ttgccacatgtctttcatctaaagcc-taaatggactaaatggagctatacataaatggagcatacctg 452  Q
    |||||||||||||| |||| ||| || |||||||||||||| ||||  ||| |||||||||||||||||    
T  10696568 ttgccacatgtcttgcatccaaacccctaaatggactaaattgagcattacctaaatggagcatacctg 10696500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 385 - 457
Target Start/End: Complemental strand, 38499891 - 38499819
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    ||||||||||||||  ||| ||| |||||||||| |||||||||||   | ||||||||||||||| ||||||    
T  38499891 ttgccacatgtcttgtatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 38499819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 385 - 456
Target Start/End: Original strand, 4041412 - 4041483
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaact 456  Q
    |||||||||||||| |||| ||| |||||||||| |||||| ||||   | ||||||||||||||| |||||    
T  4041412 ttgccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaact 4041483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 388 - 458
Target Start/End: Original strand, 38500053 - 38500123
Alignment:
Q  388 ccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactcc 458  Q
    ||||||||||| |||| ||| ||||| |||| |||||||||||   | ||||||||||||||| |||||||    
T  38500053 ccacatgtcttacatccaaaccctaattggagtaaatggagcttagcctaaatggagcatacccgaactcc 38500123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 389 - 454
Target Start/End: Original strand, 43797585 - 43797650
Alignment:
Q  389 cacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaa 454  Q
    ||||||||||||||| ||| ||||||| || |||||||| ||   | |||||||||||||||||||    
T  43797585 cacatgtctttcatccaaaccctaaatagagtaaatggatcttagcctaaatggagcatacctgaa 43797650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 385 - 450
Target Start/End: Original strand, 53197212 - 53197277
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacc 450  Q
    |||||||||||||| |||| ||| |||||||||| |||||| ||||   | |||||||||||||||    
T  53197212 ttgccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacc 53197277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 7e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 320 - 455
Target Start/End: Complemental strand, 43449604 - 43449469
Alignment:
Q  320 ataagctgaggg-caatgctttgtttttaatttttattaaataaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatgga 418  Q
    |||||||||||| || || |||||||||  ||||||||||| |||||||| |||||||  ||  | |||||||||||||| |||| ||||||||||| ||    
T  43449604 ataagctgagggacactgatttgtttttt-tttttattaaagaaatctcagcccttaatctttgttttgccacatgtcttgcatccaaagcctaaataga 43449506  T
Q  419 ctaaatggagctatacataaatggagcatacctgaac 455  Q
    |||||| ||||| ||  ||||||||||||||||||||    
T  43449505 ctaaattgagctttaggtaaatggagcatacctgaac 43449469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 360 - 457
Target Start/End: Original strand, 43450122 - 43450219
Alignment:
Q  360 taaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    ||||||||| || ||||| || || |||||||||||| | |||| |||   |||||||||||||||||||  ||  ||||||||||||||||||||||    
T  43450122 taaatctcagcctttaaactttattttgccacatgtcctccatccaaaatataaatggactaaatggagcattaggtaaatggagcatacctgaactc 43450219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 385 - 457
Target Start/End: Complemental strand, 17370139 - 17370067
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    |||||||||||||| |||| ||| |||||||||| ||||||||| |   ||||||||||||||||| ||||||    
T  17370139 ttgccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcataaatggagcatacccgaactc 17370067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 389 - 457
Target Start/End: Original strand, 5984473 - 5984542
Alignment:
Q  389 cacatgtctttcatctaaagcc-taaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    |||||||||||||||||||  | |||||||||||| ||||||  ||| ||||| ||||||||||||||||    
T  5984473 cacatgtctttcatctaaactcataaatggactaagtggagcgttacttaaatagagcatacctgaactc 5984542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 385 - 457
Target Start/End: Complemental strand, 31194037 - 31193965
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    |||||||||||||| |||| ||| | |||||||| |||||||||||   | ||||||||||||||| ||||||    
T  31194037 ttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 31193965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 385 - 457
Target Start/End: Original strand, 31194194 - 31194266
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    |||||||||||||| |||| ||| | |||||||| |||||||||||   | ||||||||||||||| ||||||    
T  31194194 ttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 31194266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 1e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 348 - 429
Target Start/End: Complemental strand, 43598154 - 43598073
Alignment:
Q  348 atttttattaaataaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatggactaaatggagc 429  Q
    ||||||||||||  ||||||||| |||||| ||||| |||||||||||||| |||||||| | |||||||||||||| ||||    
T  43598154 atttttattaaactaatctcaacacttaaatttaatattgccacatgtcttgcatctaaatcttaaatggactaaattgagc 43598073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 385 - 457
Target Start/End: Complemental strand, 6911101 - 6911029
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    |||||||||||||| |||| ||| |||||||||| |||||||||||   | ||||||||||||||||||||||    
T  6911101 ttgccacatgtcttacatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacctgaactc 6911029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 385 - 450
Target Start/End: Complemental strand, 8489445 - 8489380
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacc 450  Q
    |||||||||||||| |||| ||| |||||||||| |||||| ||||  || |||||||||||||||    
T  8489445 ttgccacatgtcttacatccaaaccctaaatggaataaatgaagcttaacctaaatggagcatacc 8489380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 385 - 457
Target Start/End: Original strand, 15009087 - 15009159
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    |||||||||||||| |||| ||| |||||||||| |||||| ||||   | ||||||||||||||| ||||||    
T  15009087 ttgccacatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaactc 15009159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 411 - 457
Target Start/End: Original strand, 27926319 - 27926365
Alignment:
Q  411 taaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    |||||||||||||||||||  | | ||||||||||||||||||||||    
T  27926319 taaatggactaaatggagccttgcctaaatggagcatacctgaactc 27926365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 404 - 458
Target Start/End: Complemental strand, 43598057 - 43598003
Alignment:
Q  404 taaagcctaaatggactaaatggagctatacataaatggagcatacctgaactcc 458  Q
    |||| ||||||| |||||||||||||  ||| ||||||||||||||||| |||||    
T  43598057 taaatcctaaattgactaaatggagcactacctaaatggagcatacctggactcc 43598003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 385 - 458
Target Start/End: Complemental strand, 14999243 - 14999170
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactcc 458  Q
    |||||||||||||| |||| ||| |||||||||| ||||| |||||   | ||||||||||||| | |||||||    
T  14999243 ttgccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagcctaaatggagcatatccgaactcc 14999170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 351 - 454
Target Start/End: Complemental strand, 24197789 - 24197686
Alignment:
Q  351 tttattaaataaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacc 450  Q
    ||||||||| |||||||| |||||||  ||  | |||||||||||||| |||| |||| |||||| |||||||| ||||| ||  |||||||||||||||    
T  24197789 tttattaaagaaatctcagcccttaatctttgttttgccacatgtcttgcatccaaagtctaaatagactaaattgagctttaggtaaatggagcatacc 24197690  T
Q  451 tgaa 454  Q
    ||||    
T  24197689 tgaa 24197686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 457
Target Start/End: Original strand, 24198338 - 24198435
Alignment:
Q  360 taaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    ||||||||| |||||||| || || |||||||||||| | |||| |||   |||||||||||||||||||  ||  ||||| ||||||| ||||||||    
T  24198338 taaatctcagcccttaaactttattttgccacatgtcctacatccaaaatataaatggactaaatggagcattaggtaaatagagcatatctgaactc 24198435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 24195021 - 24194981
Alignment:
Q  389 cacatgtctttcatctaaagcctaaatggactaaatggagc 429  Q
    |||||||||| |||| |||||||||||||||||||||||||    
T  24195021 cacatgtcttgcatccaaagcctaaatggactaaatggagc 24194981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 387 - 458
Target Start/End: Complemental strand, 48737327 - 48737256
Alignment:
Q  387 gccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactcc 458  Q
    |||||||||||| |||||| | || ||||||||||||||||||  ||| |||||||||||||||| ||||||    
T  48737327 gccacatgtcttgcatctagaccccaaatggactaaatggagcattacctaaatggagcatacctaaactcc 48737256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 348 - 458
Target Start/End: Original strand, 9905700 - 9905810
Alignment:
Q  348 atttttattaaataaatctcaacccttaaaattaatcttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcat 447  Q
    ||||| |||||||||||||||||| ||| | ||||| ||| ||  ||||||  ||| ||||| ||||||||||||||| |||  ||| |||||||||| |    
T  9905700 attttaattaaataaatctcaacctttatatttaattttgtcatgtgtcttcgatccaaagcttaaatggactaaatgaagcattacctaaatggagcgt 9905799  T
Q  448 acctgaactcc 458  Q
    || ||||||||    
T  9905800 acttgaactcc 9905810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 48737933 - 48738003
Alignment:
Q  387 gccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    |||||||||||| |||||| | || ||||||||||||||||||  ||| |||||||||||||||| |||||    
T  48737933 gccacatgtcttgcatctagaccccaaatggactaaatggagcattacctaaatggagcatacctaaactc 48738003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 389 - 458
Target Start/End: Original strand, 39983870 - 39983939
Alignment:
Q  389 cacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactcc 458  Q
    |||||||||| |||| ||| |||||||||| |||||||||||   | |||||||||||||| ||||||||    
T  39983870 cacatgtcttgcatccaaaccctaaatggagtaaatggagcttcgcctaaatggagcatacatgaactcc 39983939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 385 - 457
Target Start/End: Original strand, 19318377 - 19318449
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    |||||||||||||| |||||||| | |||||||| |||||| ||||   | ||||||||||||||| ||||||    
T  19318377 ttgccacatgtcttgcatctaaaccttaaatggagtaaatgaagcttagcctaaatggagcatacccgaactc 19318449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 389 - 457
Target Start/End: Original strand, 19318452 - 19318520
Alignment:
Q  389 cacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    |||||||||| |||||||| | |||||||| |||||||||||   | ||||||||||||||| ||||||    
T  19318452 cacatgtcttgcatctaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 19318520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 389 - 444
Target Start/End: Complemental strand, 28547553 - 28547498
Alignment:
Q  389 cacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggag 444  Q
    |||||||||| |||| ||| ||||||| |||||||||||||||| | |||||||||    
T  28547553 cacatgtcttgcatccaaaacctaaattgactaaatggagctattcctaaatggag 28547498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 411 - 457
Target Start/End: Complemental strand, 9905254 - 9905208
Alignment:
Q  411 taaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    |||||||||||||| ||||  ||| ||||||||||||||||||||||    
T  9905254 taaatggactaaattgagcattacctaaatggagcatacctgaactc 9905208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 389 - 458
Target Start/End: Original strand, 25048257 - 25048326
Alignment:
Q  389 cacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactcc 458  Q
    |||||||||| |||| ||| |||||||| | |||||||||||   | ||||||||||||||| |||||||    
T  25048257 cacatgtcttgcatccaaatcctaaatgaagtaaatggagcttagcctaaatggagcatacccgaactcc 25048326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 385 - 430
Target Start/End: Complemental strand, 35207250 - 35207205
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagct 430  Q
    |||||||||||||| |||| ||| |||||||||| |||||||||||    
T  35207250 ttgccacatgtcttgcatccaaaccctaaatggagtaaatggagct 35207205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 385 - 457
Target Start/End: Original strand, 46582492 - 46582565
Alignment:
Q  385 ttgccacatgtctttcatctaa-agcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    ||||||| ||||||||||| || | |||||||||  |||||||||| | |  ||||||||||||||||||||||    
T  46582492 ttgccacttgtctttcatccaagaccctaaatggtataaatggagcaacatgtaaatggagcatacctgaactc 46582565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 388 - 457
Target Start/End: Original strand, 3385543 - 3385612
Alignment:
Q  388 ccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactc 457  Q
    |||||| |||| |||| ||| |||||||||| |||||||||||   | ||||||||||||||| ||||||    
T  3385543 ccacatatcttacatccaaaccctaaatggagtaaatggagcttggcctaaatggagcatacccgaactc 3385612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 385 - 458
Target Start/End: Original strand, 24883197 - 24883270
Alignment:
Q  385 ttgccacatgtctttcatctaaagcctaaatggactaaatggagctatacataaatggagcatacctgaactcc 458  Q
    ||||||||| |||| |||| ||| |||||||||| |||||||||||   | |||||||| |||||| |||||||    
T  24883197 ttgccacatatcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaacatacccgaactcc 24883270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University