View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5779-Insertion-3 (Length: 1055)
Name: NF5779-Insertion-3
Description: NF5779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5779-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 730; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 7 - 760
Target Start/End: Original strand, 28803579 - 28804332
Alignment:
| Q |
7 |
agctgcaaaccgtgaccttatccggcagcaattcaaaaccctcgtccgactgcttgacccaaacaagaacaaatttccatttgcggacgaagctcttatg |
106 |
Q |
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| T |
28803579 |
agctgcaaaccgtgaccttatccggcagcaattcaaaaccctcgtccgactgcttgacccaaacaagaacaaatttccatttgctgatgaagctcttatg |
28803678 |
T |
|
| Q |
107 |
cgagtccgtgaagcctggtatgttctctctgacccggttagactagaaaaattagaacgccagatccgtggagatgatgtttcagctgcgtcattttgga |
206 |
Q |
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| T |
28803679 |
cgagtccgtgaagcctggtatgttctctctgacccggttagactagaaaaattagaacgccagatccgtggagatgatgtttcagctgcgtcattttgga |
28803778 |
T |
|
| Q |
207 |
ctatgtgtccttattgttggtatttgcatgaatatgagagaaagtatgaagactgttctcttagatgtgcaaattgtaagaggacatttcacggtacagc |
306 |
Q |
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| T |
28803779 |
ctatgtgtccttattgttggtatttgcatgaatatgagagaaagtatgaagactgttctcttagatgtgcaaattgtaagaggacatttcacggtacagc |
28803878 |
T |
|
| Q |
307 |
cgtgaatcccccggattcagagtctatggtggagggaaaggaacaatactattgctatcatatgagtttgcctttgaggtatcctgtggatggagggtct |
406 |
Q |
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| T |
28803879 |
cgtgaatcccccggattcagagtctatggtggagggaaaggaacaatactattgctatcatatgagtttgcctttgaggtatcctgtggatggagggtct |
28803978 |
T |
|
| Q |
407 |
cagtttgaacttgatggaaagaagatgaggatcaaaactgtggctaatagagttagagtgaaagcgtttgttcctgagagtgaatctgaccctgaatctg |
506 |
Q |
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| T |
28803979 |
cagtttgaacttgatggaaagaagatgaggatcaaaactgtggctaatagagttagagtgaaagcgtttgctcctgagagtgaatctgaccctgaatctg |
28804078 |
T |
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| Q |
507 |
atccagaagaaatggaagtggaaatgtgaaaacctaatttgaagtgtattttgggggaaatgatgaaattgtggattatgttgtttttgtgtgtatgaaa |
606 |
Q |
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| T |
28804079 |
atccagaagaaatggaagtggaaatgtgaaaacctaatttgaagtgtattttgggggaaatgatgaaattgtggattatgttgtttttatgtgtatgaaa |
28804178 |
T |
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| Q |
607 |
agatgctatgctttgcttgtgttggagattttaggagtagattcaacatgttgtaatcttgtaaatattgtgttggactagttaagttggtaatgcatgt |
706 |
Q |
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| T |
28804179 |
agatgctatgctttgcttgtgttggagattttaggagtagattcaacatgttgtaatcttgtaaatattgtgtaggactagttaagttggtaatgcatgt |
28804278 |
T |
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| Q |
707 |
ttaacttctgacttatgagtaacttaagagaatgtgaatctttcttcttaatga |
760 |
Q |
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| T |
28804279 |
ttaacttatgacttatgagtaacttaagagaatgtgaatctttcttcttaatga |
28804332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 843 - 1025
Target Start/End: Original strand, 28804484 - 28804665
Alignment:
| Q |
843 |
ttagacagaaattgaccagatttttaaagcatgaaatagagtgaaatttgagttgattgtgatatctttaatgaaataaatatttca-gtgtttacaagg |
941 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |||| |
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| T |
28804484 |
ttagacagaaattgagcagatttttaaagcataaaatagagtgaaa-ttgagttgattgtgatatctttaatgaaat-aatatttcaggtgtttagaagg |
28804581 |
T |
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| Q |
942 |
gaagttcataatgcttttttgagattctcatatatgctga--gtgataatgactaattgagcttgaattatcaattcatgtgattt |
1025 |
Q |
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| T |
28804582 |
gaagttcataatgc-tttttgagattctcatatatgctgaagttgataatgactaa-tgagccttgatattcaattcatgtgattt |
28804665 |
T |
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