View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5779-Insertion-4 (Length: 1050)
Name: NF5779-Insertion-4
Description: NF5779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5779-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 239 - 871
Target Start/End: Complemental strand, 40727054 - 40726415
Alignment:
| Q |
239 |
caagacaaccaacaccttcaca--tatatgtttcatatccaagttgaacactttctttatgtgccttgtttgttagggttccaaactatgaaagtgtcgt |
336 |
Q |
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| T |
40727054 |
caagacaaccaacaccttcacacatatatgtttcatatccaagttgaacactttctttatgtgccttgtttgttagggttccaaactatgaaagtgtcgt |
40726955 |
T |
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| Q |
337 |
gtttcacacnnnnnnnnnnnngtggattaaaattctacgatgcccaaaaaataactatttggagtatgttcaacaccttggaaaaaatcatgcagatgac |
436 |
Q |
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| T |
40726954 |
gtttcacacaaaaaaaaaaaagtggattaaaattctactatgcccaaaaaataactatttggagaatgttcaacaccttggaaaaaatcatgcagatgac |
40726855 |
T |
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| Q |
437 |
attccaaagagatatggggtgcaagttacccataaaaggacaagttgttgaccataacaatgttggaatcatcaacaatgaggggcagcgagtctaccta |
536 |
Q |
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| T |
40726854 |
attccaaagagatatggggtgcaagttacccataaaaggacaagttgttgaccataacaatgttggaatcatcaacaatgaggggcagcgagtctaccta |
40726755 |
T |
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| Q |
537 |
gtgaatgattgaagtttgtttgggtgaatttggtaaaaagtgtgtctttgaatccaactcatgtgaatagtgcagtaagaaattgattcatttaagaagt |
636 |
Q |
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| T |
40726754 |
gtgaatgattgaagtttgtttgggtgaatttggtaaaaagtgtgtctttgaatccaactcatgtgaatagtgcagtaagaaattgattcatttaagaagt |
40726655 |
T |
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| Q |
637 |
gtgtctttgtaagccctttgtctctcatggtgaata-------------gcacaaatcatcttcttggctatgcactaaaatgttgtattggtcacgcac |
723 |
Q |
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| T |
40726654 |
gtgtc--tacaagccctttg--tctcatggtgaataagctagctactctacacaaatcatcttcttggctatgcactaaaatgttgtcttggtcacgcac |
40726559 |
T |
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| Q |
724 |
aacttcaaactcaattgatctccttcatattgcaactaaagcataaaataaaagagactattcatttctttttccttaagtcaatgcaccttggctcttt |
823 |
Q |
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| T |
40726558 |
aacttcaaactcaattgatctccttcatattgcaactaaagcataaaataaaagagactattcatttctttttcctcaagtcaatgcaccttggctcttt |
40726459 |
T |
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| Q |
824 |
acttaatttcacaacaaaatagtataatttgaccactcctcatttatt |
871 |
Q |
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| T |
40726458 |
ac----tttcacaacaaaatagtataatttgaccactcctcatttatt |
40726415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 7 - 179
Target Start/End: Complemental strand, 40727285 - 40727114
Alignment:
| Q |
7 |
aggtttgcctccccgtatctaaaattttaaataccaagaatatgaaaaatgttatgaaagcaacgattctcactgtctgaannnnnnnctactcgtgtta |
106 |
Q |
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| T |
40727285 |
aggtttgcctccccgtatctaaaattttaaataccaagaatatg-aaaatgttatgaaagcaacgattctcactatctgaatttttttctactcgtgtta |
40727187 |
T |
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| Q |
107 |
gtttgatctcaccatgtatatnnnnnnnnnngtacatgttaagagatgtcacctcttctcagtattctgagag |
179 |
Q |
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| T |
40727186 |
gtttgatctcaccatgtatataagaaaaaaagtacatgttaagagatgttacctcttctcagtattctgagag |
40727114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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