View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5779-Insertion-5 (Length: 985)
Name: NF5779-Insertion-5
Description: NF5779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5779-Insertion-5 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
| [»] scaffold0164 (4 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 778; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 7 - 892
Target Start/End: Original strand, 20044422 - 20045309
Alignment:
| Q |
7 |
aagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgcaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20044422 |
aagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgcaat |
20044521 |
T |
|
| Q |
107 |
tcagaaatctgaatgtaatctccttgtgaaaaaacatt-tttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaa |
205 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | |
|
|
| T |
20044522 |
tcagaaatccgaatgtaatctccttgtg-aaaaacattctttgagttcgttccaaacatcaattgcgttatctagaaaaacaatactttgtgcaattgga |
20044620 |
T |
|
| Q |
206 |
gtttcaacagaattcatgatccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20044621 |
gtttcaacagaattcatgatccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccgtgggaaccggaatggatccat |
20044720 |
T |
|
| Q |
306 |
caacgaaatcgaatttgttcttcgctcccaacgctcttcgcatcgaacgagcccaagaatggtaatttgaatgcgtaagaacgggagtaatcgcaacgga |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20044721 |
caacgaaatcgaatttgttcttcgctcccaaagctcttcgcatcgaacgagcccaagaatggtaatttgaatgcgtaagaacgggagtaatcgcaacgga |
20044820 |
T |
|
| Q |
406 |
ggaaggtccgtcagaagagtgaacatagtaaacactaccaggttgttgagaaggatcggtaacaagaggagcaccaccgttggtcgcgccgttaacggcg |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
20044821 |
ggaaggtccgtcagaagagtgaacatagtaaacactaccgggttgttgagaaggatcggtaactagaggagcaccaccgttggccgcgccgttaactgcg |
20044920 |
T |
|
| Q |
506 |
gtgttgttgcgaaccatcgcgaacagggagaagataaaacgaaaagcgaaacaaagaacaaaagaaagataacgatgcgcaacagagcttagaaatgctc |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20044921 |
gtgttgttgcgaaccatcgcgaacagggagaagagaaaacgaaaagcgaaacaaagaacaaaagaaagataacgatgcgcaacagagcttagaaaagctc |
20045020 |
T |
|
| Q |
606 |
tgataccatcttaaagttcaccattgacatggtgaaatcagagaaagtggaagcttagagaagaaagaacacagagaaaagaatatctctt--tttattg |
703 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
20045021 |
tgataccatcttaaagttcaccattaacatggtggaatcagagaaagtggaagcttagagaagaaagaacacagagaaaagaatatctttttctttattg |
20045120 |
T |
|
| Q |
704 |
aatgaatcaaagttagttacaatgtagctatatataaaacattggatctctaactaactcaactaattccaacaaactagtagttattacaaggctgtgt |
803 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |
|
|
| T |
20045121 |
aatgaatcaaagttagttacaatgtagctatatataaaaccttggatctctaactaactcaactagttctaacaaactagtagttattacaaggctttgt |
20045220 |
T |
|
| Q |
804 |
tactctaagagcagtactatagtaactatgatgtgtaacagataactttgctgaacaagctattgaatgaatgtagactttaacattaa |
892 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20045221 |
tactctaagagcagtactacagtaactatgatgtgtaacggataactttgctgaacaagctattgaatgaatgtagactttaacattaa |
20045309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 613 - 888
Target Start/End: Original strand, 20040307 - 20040584
Alignment:
| Q |
613 |
atcttaaagttcaccattgacatggtgaaatcagagaaagtggaagcttagagaagaaagaacacagagaaaagaatatctcttt--ttattgaatgaat |
710 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
20040307 |
atcttaaagttcaccattaacatggtggaatcagagaaagtggaagcttagagaagaaagaacacagagaaaagaatatctttttctttattgaatgaat |
20040406 |
T |
|
| Q |
711 |
caaagttagttacaatgtagctatatataaaacattggatctctaactaactcaactaattccaacaaactagtagttattacaaggctgtgttactcta |
810 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20040407 |
caaagttagttacaatgtagctatatataaaaccttggatctctaactaactcaactagttctaacaaactagtagttattacaaggctttgttactcta |
20040506 |
T |
|
| Q |
811 |
agagcagtactatagtaactatgatgtgtaacagataactttgctgaacaagctattgaatgaatgtagactttaaca |
888 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20040507 |
agagcagtactacagtaactatgatgtgtaacggataactttgctgaacaagctattgaatgaatgtagactttaaca |
20040584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 28015596 - 28015558
Alignment:
| Q |
292 |
cggaatggatccatcaacgaaatcgaatttgttcttcgc |
330 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28015596 |
cggaatggatccatcaacgaaggcgaatttgttcttcgc |
28015558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 126 - 614
Target Start/End: Complemental strand, 51589799 - 51589311
Alignment:
| Q |
126 |
ctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaagtttcaacagaattcatgat |
225 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51589799 |
ctccttgtgaaaaacgttctttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaagtttcaacagaattcatgat |
51589700 |
T |
|
| Q |
226 |
ccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccatcaacgaaatcgaatttgttc |
325 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51589699 |
ccaggagtggattaacatgttgcagcggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccatcaacgaaatcgaatttgttc |
51589600 |
T |
|
| Q |
326 |
ttcgctcccaacgctcttcgcatcgaacgagcccaagaatggtaatttgaatgcgtaagaacgggagtaatcgcaacggaggaaggtccgtcagaagagt |
425 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51589599 |
ttcgctcccaacgctcttcacatcgaacgagcccaagaatggtaatttgaatgcgtaagaacgggagtaatcgcaacggaggaaggtccgtcagaagagt |
51589500 |
T |
|
| Q |
426 |
gaacatagtaaacactaccaggttgttgagaaggatcggtaacaagaggagcaccaccgttggtcgcgccgttaacggcggtgttgttgcgaaccatcgc |
525 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
51589499 |
gaacatagtaaacactaccgggttgttgagaaggatcggtaacaagaggagcaccgccgttggccgcgccgttaacggcggtgttgttgcgaaccatcgc |
51589400 |
T |
|
| Q |
526 |
gaacagggagaagataaaacgaaaagcgaaacaaagaacaaaagaaagataacgatgcgcaacagagcttagaaatgctctgataccat |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
51589399 |
gaacagggagaagataaaacgaaaagcgaaacaaagaacaaaagaaagataacgatgtgcaacagagcttagaaaagctctgataccat |
51589311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 614 - 888
Target Start/End: Complemental strand, 3372061 - 3371789
Alignment:
| Q |
614 |
tcttaaagttcaccattgacatggtgaaatcagagaaagtggaagcttagagaagaaagaacacagagaaaagaatatctctttttattgaatgaatcaa |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3372061 |
tcttaaagttcaccattgacatggtgaaatcagagaaagtggaagcttagagaagaaagaacacagagaaaagaatatctcttt--attgaatgaatcaa |
3371964 |
T |
|
| Q |
714 |
agttagttacaatgtagctatatataaaacattggatctctaactaactcaactaattccaacaaactagtagttattacaaggctgtgttactctaaga |
813 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3371963 |
agttagttacattgtagctatatataaaaccttggatctctaactaactcaactagttctaacaaactagtagttattacaaggctgtgttactctaaga |
3371864 |
T |
|
| Q |
814 |
gcagtactatagtaactatgatgtgtaacagataactttgctgaacaagctattgaatgaatgtagactttaaca |
888 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3371863 |
gcagtactatagtaactatgatgtgtaacagataactttgctgaacaagctattgaatgaatgtagactttaaca |
3371789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 7 - 462
Target Start/End: Original strand, 49642657 - 49643112
Alignment:
| Q |
7 |
aagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgcaat |
106 |
Q |
| |
|
||||||||||||||| |||||||| | || ||||| ||||| || ||||| | ||| ||||| |||||||| ||||||| ||| |||||||| || ||| |
|
|
| T |
49642657 |
aagataagcttcaagctcttcccataagactttcaaggcagtgaaaaattctgtaactgaacgtgaatcttgtttcaaactaaaaatttcacattgtaat |
49642756 |
T |
|
| Q |
107 |
tcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaag |
206 |
Q |
| |
|
|||||||| ||||| |||| |||| || || | ||||||||| ||||| |||||||| || || | ||| |||||||| ||||| ||||||||| |
|
|
| T |
49642757 |
tcagaaatacgaatgaaatcaccttaggagaatctttctttgagttcattccatacatcaatggcatttttcaggaaaacaatgctttgtgcaattgaat |
49642856 |
T |
|
| Q |
207 |
tttcaacagaattcatgatccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccatc |
306 |
Q |
| |
|
||||||||||||||| ||||| || || | | |||||||||||| ||||| ||||||||| | |||||||| ||| | ||||| || || |||||||| |
|
|
| T |
49642857 |
cttcaacagaattcataatccaagaatgcacaagcatgttgcaacgattccaagccttgaaatttggatcaaaatccgttggaacagggatagatccatc |
49642956 |
T |
|
| Q |
307 |
aacgaaatcgaatttgttcttcgctcccaacgctcttcgcatcgaacgagcccaagaatggtaatttgaatgcgtaagaacgggagtaatcgcaacggag |
406 |
Q |
| |
|
|| ||||| || |||||||||||||| | ||||||||||| ||||| ||||||||||||||||||||||| ||||||| || ||||| || || || |
|
|
| T |
49642957 |
cacaaaatcaaacttgttcttcgctccaagagctcttcgcatagaacgcgcccaagaatggtaatttgaatggctaagaaccggtgtaatggcgactgaa |
49643056 |
T |
|
| Q |
407 |
gaaggtccgtcagaagagtgaacatagtaaacactaccaggttgttgagaaggatc |
462 |
Q |
| |
|
|| || || ||||||| ||||| || || || ||||||||||||| || ||||| |
|
|
| T |
49643057 |
gagggaccatcagaagcatgaacgtaatacacgttaccaggttgttgcgacggatc |
49643112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 576 - 630
Target Start/End: Original strand, 49643236 - 49643290
Alignment:
| Q |
576 |
aacgatgcgcaacagagcttagaaatgctctgataccatcttaaagttcaccatt |
630 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| | || ||||||||| |
|
|
| T |
49643236 |
aacgatgcgcaacagagcttagagacgctctgataccatcatgaacttcaccatt |
49643290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 252; Significance: 1e-139; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 613 - 888
Target Start/End: Complemental strand, 22980590 - 22980315
Alignment:
| Q |
613 |
atcttaaagttcaccattgacatggtgaaatcagagaaagtggaagcttagagaagaaagaacacagagaaaagaatatctctttttattgaatgaatca |
712 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22980590 |
atcttaaagttcaccattgacatggtgaaatcagagaaagtggaagcttagagaagaaagaacacagagaaaataatatctctttttattgaatgaatca |
22980491 |
T |
|
| Q |
713 |
aagttagttacaatgtagctatatataaaacattggatctctaactaactcaactaattccaacaaactagtagttattacaaggctgtgttactctaag |
812 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22980490 |
aagttagttacaatgtagctatatataaaaccttggatctctaactaactcaactagttctaacaaacaagtagttattacaaggctgtgttactctaag |
22980391 |
T |
|
| Q |
813 |
agcagtactatagtaactatgatgtgtaacagataactttgctgaacaagctattgaatgaatgtagactttaaca |
888 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22980390 |
agcagtactacagtaactatgatgtgtaacagataactttgctgaacaagctattgaatgaatgtagactttaaca |
22980315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 7 - 462
Target Start/End: Complemental strand, 52771574 - 52771119
Alignment:
| Q |
7 |
aagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgcaat |
106 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||| || || |||||||| ||| ||||||||||||| || ||||||||||| || |||||| |
|
|
| T |
52771574 |
aagatatgcttcaagttcttcccatagaaccttcaaagcagtgaaaaactcagaaactgaatgcgaatcttgctttaatccaaagatttcgcattgcaat |
52771475 |
T |
|
| Q |
107 |
tcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaag |
206 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||| | |||||||| ||||||||||| || ||||| || ||||| |||||||| || ||||| ||| |
|
|
| T |
52771474 |
tcagaaattcgaatgtaatcaccttgagaaaaccgttccttgagttcattccaaacatccatggcgttctcaagaaacacaatactctgtgcaatagaat |
52771375 |
T |
|
| Q |
207 |
tttcaacagaattcatgatccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccatc |
306 |
Q |
| |
|
||||||||||||||||||||| || || | | |||||||||||| ||||| || |||||||| |||||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
52771374 |
cttcaacagaattcatgatccatgaatgtacaagcatgttgcaacgattccatgctttgaaacttggatcaaattccataggaactggaattgatccatc |
52771275 |
T |
|
| Q |
307 |
aacgaaatcgaatttgttcttcgctcccaacgctcttcgcatcgaacgagcccaagaatggtaatttgaatgcgtaagaacgggagtaatcgcaacggag |
406 |
Q |
| |
|
|| ||||| || |||||||| |||| || ||||||| ||| ||||| |||||||| || || ||||| | | | || ||||||| | |||||| |
|
|
| T |
52771274 |
cacaaaatcaaacttgttctttcctcctaaagctcttctcattgaacgcgcccaagagtgatagtttgagttgttcaataccggagtaacagtgacggag |
52771175 |
T |
|
| Q |
407 |
gaaggtccgtcagaagagtgaacatagtaaacactaccaggttgttgagaaggatc |
462 |
Q |
| |
|
||||| || |||||||| ||||| || || || ||||||||||||| |||||||| |
|
|
| T |
52771174 |
gaaggaccatcagaagaatgaacgtaatacacgttaccaggttgttgcgaaggatc |
52771119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 7 - 462
Target Start/End: Original strand, 31196739 - 31197194
Alignment:
| Q |
7 |
aagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgcaat |
106 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||| || || |||||||| ||||||||||||||||| || ||||||||||| || |||||| |
|
|
| T |
31196739 |
aagatatgcttcaagttcttcccatagaaccttcaaagcagtgaaaaactcagaaactgaacgcgaatcttgctttaatccaaagatttcgcattgcaat |
31196838 |
T |
|
| Q |
107 |
tcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaag |
206 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||| | |||||||| ||||||||||| || ||||| || ||||| |||||||| || ||||| ||| |
|
|
| T |
31196839 |
tcagaaattcgaatgtaatcaccttgagaaaaccgttccttgagttcattccaaacatccatggcgttctcaagaaacacaatactctgtgcaatagaat |
31196938 |
T |
|
| Q |
207 |
tttcaacagaattcatgatccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccatc |
306 |
Q |
| |
|
||||||||||||||||||||| || || | | |||||||||||| ||||| || |||||||| |||||||| ||||| |||| ||||| |||||||| |
|
|
| T |
31196939 |
cttcaacagaattcatgatccatgaatgtacaagcatgttgcaacgattccatgctttgaaacttggatcaaattccataagaactggaattgatccatc |
31197038 |
T |
|
| Q |
307 |
aacgaaatcgaatttgttcttcgctcccaacgctcttcgcatcgaacgagcccaagaatggtaatttgaatgcgtaagaacgggagtaatcgcaacggag |
406 |
Q |
| |
|
|| ||||| || |||||||| |||| || ||||||| ||| ||||| |||||| | || || ||||| | | | || ||||||| | |||||| |
|
|
| T |
31197039 |
cacaaaatcaaacttgttctttcctcctaaagctcttctcattgaacgcgcccaatagtgatagtttgagttgttcaataccggagtaacagtgacggag |
31197138 |
T |
|
| Q |
407 |
gaaggtccgtcagaagagtgaacatagtaaacactaccaggttgttgagaaggatc |
462 |
Q |
| |
|
||||| || |||||||| ||||| || || || ||||||||||||| |||||||| |
|
|
| T |
31197139 |
gaaggaccatcagaagaatgaacgtaatacacgttaccaggttgttgcgaaggatc |
31197194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 7 - 378
Target Start/End: Complemental strand, 53976643 - 53976272
Alignment:
| Q |
7 |
aagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgcaat |
106 |
Q |
| |
|
||||||||||||||| |||||||| | || ||||| ||||| || ||||| | ||| ||||| |||||||| ||||||| ||| |||||||| || ||| |
|
|
| T |
53976643 |
aagataagcttcaagctcttcccataagactttcaaggcagtgaaaaattctgtaactgaacgtgaatcttgtttcaaactaaaaatttcacattgtaat |
53976544 |
T |
|
| Q |
107 |
tcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaag |
206 |
Q |
| |
|
||||| || ||||| |||| ||||| || || | ||||||||| ||||| |||||||| || || ||||| |||||||| ||||| ||||||||| |
|
|
| T |
53976543 |
tcagagatacgaatgaaatcaccttgggagaatctttctttgagttcattccatacatcaatggcattttccaggaaaacaatgctttgtgcaattgaat |
53976444 |
T |
|
| Q |
207 |
tttcaacagaattcatgatccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccatc |
306 |
Q |
| |
|
||||||||||||||| ||||| || || | | |||||||||||| ||||| ||||||||| | |||||||| ||| | ||||| || || |||||||| |
|
|
| T |
53976443 |
cttcaacagaattcataatccaagaatgcacaagcatgttgcaacgattccaagccttgaaatttggatcaaaatccgttggaacagggatagatccatc |
53976344 |
T |
|
| Q |
307 |
aacgaaatcgaatttgttcttcgctcccaacgctcttcgcatcgaacgagcccaagaatggtaatttgaatg |
378 |
Q |
| |
|
|| ||||| || |||||||||||||| | ||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
53976343 |
cacaaaatcaaacttgttcttcgctccaagagctctccgcatagaacgcgcccaagaatggtaatttgaatg |
53976272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 576 - 630
Target Start/End: Complemental strand, 53976058 - 53976004
Alignment:
| Q |
576 |
aacgatgcgcaacagagcttagaaatgctctgataccatcttaaagttcaccatt |
630 |
Q |
| |
|
||||||||||||| ||||||||| | |||||||||||||| | || ||||||||| |
|
|
| T |
53976058 |
aacgatgcgcaacggagcttagagaagctctgataccatcatgaacttcaccatt |
53976004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 137; Significance: 5e-71; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 7 - 375
Target Start/End: Original strand, 250500 - 250868
Alignment:
| Q |
7 |
aagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgcaat |
106 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||| || || |||||||| ||| ||||||||||||| || ||||||||||| || |||||| |
|
|
| T |
250500 |
aagatatgcttcaagttcttcccatagaaccttcaaagcagtgaaaaactcagaaactgaaagcgaatcttgctttaatccaaagatttcgcattgcaat |
250599 |
T |
|
| Q |
107 |
tcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaag |
206 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||| | |||||||| |||||||||||||| ||||| || ||||| |||||||| || ||||| ||| |
|
|
| T |
250600 |
tcagaaattcgaatgtaatcaccttgagaaaaacgttccttgagttcattccaaacatcaatggcgttctcaagaaacacaatactctgtgcaatagaat |
250699 |
T |
|
| Q |
207 |
tttcaacagaattcatgatccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccatc |
306 |
Q |
| |
|
||||||||||||||||||||| || || | | |||||||||||| ||||| || |||||||| |||||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
250700 |
cttcaacagaattcatgatccatgaatgtacaagcatgttgcaacgattccatgctttgaaacttggatcaaattccataggaactggaattgatccatc |
250799 |
T |
|
| Q |
307 |
aacgaaatcgaatttgttcttcgctcccaacgctcttcgcatcgaacgagcccaagaatggtaatttga |
375 |
Q |
| |
|
|| ||||| || |||||||| |||| || ||||||| ||| ||||| |||||| | || |||||||| |
|
|
| T |
250800 |
cacaaaatcaaacttgttctttcctcctaaagctcttctcattgaacgcgcccaaaagtgataatttga |
250868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 7 - 375
Target Start/End: Complemental strand, 16255064 - 16254696
Alignment:
| Q |
7 |
aagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgcaat |
106 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||| ||||| || || |||||||| |||||||||||||||||||| |||||||||||||| || ||| |
|
|
| T |
16255064 |
aagatatgcttcaagttcttcccatagaaccttcaatgcagtgaaaaactcagaaactgaacgcgaatcttgcttcaatccaaagatttcacattgtaat |
16254965 |
T |
|
| Q |
107 |
tcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaag |
206 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||| | |||||||| ||||||||||| || ||||| || ||||| |||||||| || ||||| ||| |
|
|
| T |
16254964 |
tcagaaatacgaatgtaatcaccttgagaaaaccgttccttgagttcattccaaacatccatggcgttctcaagaaacacaatactctgtgcaatagaat |
16254865 |
T |
|
| Q |
207 |
tttcaacagaattcatgatccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccatc |
306 |
Q |
| |
|
||||||||||||||||||||| || || | | |||||| ||||| ||||| || |||||||| |||||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
16254864 |
cttcaacagaattcatgatccatgaatgcacaagcatgttacaacgattccatgctttgaaacttggatcaaattccataggaactggaattgatccatc |
16254765 |
T |
|
| Q |
307 |
aacgaaatcgaatttgttcttcgctcccaacgctcttcgcatcgaacgagcccaagaatggtaatttga |
375 |
Q |
| |
|
|| ||||| || |||||||| |||| || ||||||| ||| ||||| |||||||| || |||||||| |
|
|
| T |
16254764 |
cacaaaatcaaacttgttctttcctcctaaagctcttctcattgaacgcgcccaagagtgataatttga |
16254696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 132; Significance: 5e-68; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 7 - 462
Target Start/End: Original strand, 97383 - 97838
Alignment:
| Q |
7 |
aagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgcaat |
106 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||| || || |||||||| ||| ||||||||||||| || ||||||||||| || |||||| |
|
|
| T |
97383 |
aagatatgcttcaagttcttcccatagaaccttcaaagcagtgaaaaactcagaaactgaatgcgaatcttgctttaatccaaagatttcgcattgcaat |
97482 |
T |
|
| Q |
107 |
tcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaag |
206 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||| | |||||||| ||||||||||| || ||||| || ||||| |||||||| || ||||| ||| |
|
|
| T |
97483 |
tcagaaattcgaatgtaatcaccttgagaaaaccgttccttgagttcattccaaacatccatggcgttctcaagaaacacaatactctgtgcaatagaat |
97582 |
T |
|
| Q |
207 |
tttcaacagaattcatgatccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccatc |
306 |
Q |
| |
|
||||||||||||||||||||| || || | | |||||||||||| ||||| || |||||||| |||||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
97583 |
cttcaacagaattcatgatccatgaatgtacaagcatgttgcaacgattccatgctttgaaacttggatcaaattccataggaactggaattgatccatc |
97682 |
T |
|
| Q |
307 |
aacgaaatcgaatttgttcttcgctcccaacgctcttcgcatcgaacgagcccaagaatggtaatttgaatgcgtaagaacgggagtaatcgcaacggag |
406 |
Q |
| |
|
|| ||||| || |||||||| |||| || ||||||| ||| ||||| |||||||| || || ||||| | | | || ||||||| | |||||| |
|
|
| T |
97683 |
cacaaaatcaaacttgttctttcctcctaaagctcttctcattgaacgcgcccaagagtgatagtttgagttgttcaataccggagtaacagtgacggag |
97782 |
T |
|
| Q |
407 |
gaaggtccgtcagaagagtgaacatagtaaacactaccaggttgttgagaaggatc |
462 |
Q |
| |
|
||||| || |||||||| ||||| || || || ||||||||||||| |||||||| |
|
|
| T |
97783 |
gaaggaccatcagaagaatgaacgtaatacacgttaccaggttgttgcgaaggatc |
97838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 5e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 7 - 462
Target Start/End: Complemental strand, 13986534 - 13986079
Alignment:
| Q |
7 |
aagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgcaat |
106 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||| || || |||||||| ||| ||||||||||||| || ||||||||||| || |||||| |
|
|
| T |
13986534 |
aagatatgcttcaagttcttcccatagaaccttcaaagcagtgaaaaactcagaaactgaatgcgaatcttgctttaatccaaagatttcgcattgcaat |
13986435 |
T |
|
| Q |
107 |
tcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaag |
206 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||| | |||||||| ||||||||||| || ||||| || ||||| |||||||| || ||||| ||| |
|
|
| T |
13986434 |
tcagaaattcgaatgtaatcaccttgagaaaaccgttccttgagttcattccaaacatccatggcgttctcaagaaacacaatactctgtgcaatagaat |
13986335 |
T |
|
| Q |
207 |
tttcaacagaattcatgatccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccatc |
306 |
Q |
| |
|
||||||||||||||||||||| || || | | |||||||||||| ||||| || |||||||| |||||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
13986334 |
cttcaacagaattcatgatccatgaatgtacaagcatgttgcaacgattccatgctttgaaacttggatcaaattccataggaactggaattgatccatc |
13986235 |
T |
|
| Q |
307 |
aacgaaatcgaatttgttcttcgctcccaacgctcttcgcatcgaacgagcccaagaatggtaatttgaatgcgtaagaacgggagtaatcgcaacggag |
406 |
Q |
| |
|
|| ||||| || |||||||| |||| || ||||||| ||| ||||| |||||||| || || ||||| | | | || ||||||| | |||||| |
|
|
| T |
13986234 |
cacaaaatcaaacttgttctttcctcctaaagctcttctcattgaacgcgcccaagagtgatagtttgagttgttcaataccggagtaacagtgacggag |
13986135 |
T |
|
| Q |
407 |
gaaggtccgtcagaagagtgaacatagtaaacactaccaggttgttgagaaggatc |
462 |
Q |
| |
|
||||| || |||||||| ||||| || || || ||||||||||||| |||||||| |
|
|
| T |
13986134 |
gaaggaccatcagaagaatgaacgtaatacacgttaccaggttgttgcgaaggatc |
13986079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 7 - 462
Target Start/End: Complemental strand, 18252473 - 18252018
Alignment:
| Q |
7 |
aagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgcaat |
106 |
Q |
| |
|
||||||||||||||| |||||||| | || ||||||| ||| || ||||| ||| ||||| |||||||| ||||||| |||||||||||| || ||| |
|
|
| T |
18252473 |
aagataagcttcaagctcttcccataacactttcaaagtagtgaaaaattctataactgaacgtgaatcttgtttcaaactaaagatttcacattgtaat |
18252374 |
T |
|
| Q |
107 |
tcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaag |
206 |
Q |
| |
|
||||| || |||| |||| ||||| || || | ||||||||| ||||| |||||||| || || |||||||||| ||| ||||| ||||||||| |
|
|
| T |
18252373 |
tcagagatacgaataaaatcaccttgggagaatctttctttgagttcattccatacatcaatggcattttccagaaaaaaaatgctttgtgcaattgaat |
18252274 |
T |
|
| Q |
207 |
tttcaacagaattcatgatccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccatc |
306 |
Q |
| |
|
||||||||||||||| ||||| || | | | ||| |||||||| ||||| || |||||| | |||||||| ||| | |||| ||||| |||||||| |
|
|
| T |
18252273 |
cttcaacagaattcataatccaagaatacacgagcatattgcaacgattccaagctttgaaatttggatcaaaatccgttggaataggaatagatccatc |
18252174 |
T |
|
| Q |
307 |
aacgaaatcgaatttgttcttcgctcccaacgctcttcgcatcgaacgagcccaagaatggtaatttgaatgcgtaagaacgggagtaatcgcaacggag |
406 |
Q |
| |
|
|| ||||| || ||||||||| |||| | ||||||||||| ||||| |||||||||||| |||||||||| ||||||| || ||||| || ||||| |
|
|
| T |
18252173 |
cacaaaatcaaacttgttcttccctccaagagctcttcgcatagaacgcgcccaagaatggaaatttgaatgactaagaaccggtgtaatggcgacggaa |
18252074 |
T |
|
| Q |
407 |
gaaggtccgtcagaagagtgaacatagtaaacactaccaggttgttgagaaggatc |
462 |
Q |
| |
|
|| || || |||||| ||||| || || ||| ||||||||||||| || ||||| |
|
|
| T |
18252073 |
gagggaccatcagaatcatgaacgtaatacacattaccaggttgttgcgacggatc |
18252018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 576 - 630
Target Start/End: Complemental strand, 18251884 - 18251830
Alignment:
| Q |
576 |
aacgatgcgcaacagagcttagaaatgctctgataccatcttaaagttcaccatt |
630 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| |||| ||||||||| |
|
|
| T |
18251884 |
aacgatgcgcaacagagcttagagaagctctgataccatcataaaattcaccatt |
18251830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 7 - 462
Target Start/End: Complemental strand, 15191625 - 15191170
Alignment:
| Q |
7 |
aagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgcaat |
106 |
Q |
| |
|
||||||||||||||| |||||||| ||||| ||||| ||||| || ||||| | ||| ||||| |||||||| ||||||| ||| ||||||||||| ||| |
|
|
| T |
15191625 |
aagataagcttcaagctcttcccatagaactttcaaggcagtgaaaaattctgtaactgaacgtgaatcttgtttcaaactaaaaatttcacactgtaat |
15191526 |
T |
|
| Q |
107 |
tcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaag |
206 |
Q |
| |
|
||||| || ||||| |||| ||||| || || | ||||||||| ||||| |||||||| || || ||||| |||||||| ||||| ||||||||| |
|
|
| T |
15191525 |
tcagagatacgaatgaaatcaccttgggagaatctctctttgagttcattccatacatcaatggcattttccaggaaaacaatgctttgtgcaattgaat |
15191426 |
T |
|
| Q |
207 |
tttcaacagaattcatgatccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccatc |
306 |
Q |
| |
|
||||||||||||||| ||||| || || | | |||||||||||| ||||| ||||||||| | |||||||| || | ||||| || || |||||||| |
|
|
| T |
15191425 |
cttcaacagaattcataatccaagaatgcacaagcatgttgcaacgattccaagccttgaaatttggatcaaaatctgttggaacagggatagatccatc |
15191326 |
T |
|
| Q |
307 |
aacgaaatcgaatttgttcttcgctcccaacgctcttcgcatcgaacgagcccaagaatggtaatttgaatgcgtaagaacgggagtaatcgcaacggag |
406 |
Q |
| |
|
|| ||||| || |||||||||||||| | ||||||||||| ||||| ||||||||||||||||||||||| ||||||| || ||||| || ||||| |
|
|
| T |
15191325 |
cacaaaatcaaacttgttcttcgctccaagagctcttcgcatagaacgcgcccaagaatggtaatttgaatggctaagaaccggtgtaatggcgacggaa |
15191226 |
T |
|
| Q |
407 |
gaaggtccgtcagaagagtgaacatagtaaacactaccaggttgttgagaaggatc |
462 |
Q |
| |
|
|| || || ||||||| ||||| || || || ||||||||||||| || ||||| |
|
|
| T |
15191225 |
gagggaccatcagaagcatgaacgtaatacacgttaccaggttgttgcgatggatc |
15191170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 576 - 630
Target Start/End: Complemental strand, 15191046 - 15190992
Alignment:
| Q |
576 |
aacgatgcgcaacagagcttagaaatgctctgataccatcttaaagttcaccatt |
630 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| |||| ||||||||| |
|
|
| T |
15191046 |
aacgatgcgcaacagagcttagagaagctctgataccatcataaacttcaccatt |
15190992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 124; Significance: 3e-63; HSPs: 4)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 7 - 462
Target Start/End: Original strand, 18349 - 18804
Alignment:
| Q |
7 |
aagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgcaat |
106 |
Q |
| |
|
||||||||||||||| |||||||| | || ||||| ||||| || ||||| | ||| ||||| |||||||| ||||||| ||| ||||||||||| ||| |
|
|
| T |
18349 |
aagataagcttcaagctcttcccataagactttcaaggcagtgaaaaattctgtaactgaacgtgaatcttgtttcaaactaaaaatttcacactgtaat |
18448 |
T |
|
| Q |
107 |
tcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaag |
206 |
Q |
| |
|
||||| || ||||| |||| ||||| || || || ||||||||| ||||| |||||||| || || ||||| |||||||| ||||| ||||||||| |
|
|
| T |
18449 |
tcagagatacgaatgaaatcaccttgggagaatctatctttgagttcattccatacatcaatggcattttccaggaaaacaatgctttgtgcaattgaat |
18548 |
T |
|
| Q |
207 |
tttcaacagaattcatgatccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccatc |
306 |
Q |
| |
|
||||||||||||||| ||||| || || | | |||||||||||| ||||| ||||||||| | |||||||| || | ||||| || || |||||||| |
|
|
| T |
18549 |
cttcaacagaattcataatccaagaatgcacaagcatgttgcaacgattccaagccttgaaatttggatcaaaatcagttggaacagggatagatccatc |
18648 |
T |
|
| Q |
307 |
aacgaaatcgaatttgttcttcgctcccaacgctcttcgcatcgaacgagcccaagaatggtaatttgaatgcgtaagaacgggagtaatcgcaacggag |
406 |
Q |
| |
|
|| ||||| || |||||||||||||| | ||||||||||| ||||| ||||||||||||||||||||||| ||||||| || ||||| || ||||| |
|
|
| T |
18649 |
cacaaaatcaaacttgttcttcgctccaagagctcttcgcatagaacgcgcccaagaatggtaatttgaatggctaagaaccggtgtaatggcgacggaa |
18748 |
T |
|
| Q |
407 |
gaaggtccgtcagaagagtgaacatagtaaacactaccaggttgttgagaaggatc |
462 |
Q |
| |
|
|| || || ||||||| ||||| || || || ||||||||||||| || ||||| |
|
|
| T |
18749 |
gagggaccatcagaagcatgaacgtaatacacgttaccaggttgttgcgatggatc |
18804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 7 - 462
Target Start/End: Original strand, 28729 - 29184
Alignment:
| Q |
7 |
aagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgcaat |
106 |
Q |
| |
|
||||||||||||||| |||||||| ||||| ||||| ||||| || ||||| | ||| ||||| |||||||| ||||||| ||| |||||||| || ||| |
|
|
| T |
28729 |
aagataagcttcaagctcttcccatagaactttcaaggcagtgaaaaattctgtaactgaacgtgaatcttgtttcaaactaaaaatttcacattgtaat |
28828 |
T |
|
| Q |
107 |
tcagaaatctgaatgtaatctccttgtgaaaaaacatttttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaag |
206 |
Q |
| |
|
||||| || |||| |||| ||||| || || | ||||||||| ||||| |||||||| || || ||||| |||||||| ||||| ||||||||| |
|
|
| T |
28829 |
tcagagatacgaataaaatcaccttgggagaatctctctttgagttcattccatacatcaatggcattttccaggaaaacaatgctttgtgcaattgaat |
28928 |
T |
|
| Q |
207 |
tttcaacagaattcatgatccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccatc |
306 |
Q |
| |
|
||||||||||||||| ||||| || || | | |||||||||||| ||||| |||||||| | |||||||| ||| | ||||| || || |||||||| |
|
|
| T |
28929 |
cttcaacagaattcataatccaagaatgcacaagcatgttgcaacgattccaagccttgaagtttggatcaaaatccgttggaacagggatagatccatc |
29028 |
T |
|
| Q |
307 |
aacgaaatcgaatttgttcttcgctcccaacgctcttcgcatcgaacgagcccaagaatggtaatttgaatgcgtaagaacgggagtaatcgcaacggag |
406 |
Q |
| |
|
|| ||||| || |||||||||||||| | ||||||||||| ||||| ||||||||||||||||||||||| ||||||| || ||||| || ||||| |
|
|
| T |
29029 |
cacaaaatcaaacttgttcttcgctccaagagctcttcgcatagaacgcgcccaagaatggtaatttgaatggctaagaaccggtgtaatggcgacggaa |
29128 |
T |
|
| Q |
407 |
gaaggtccgtcagaagagtgaacatagtaaacactaccaggttgttgagaaggatc |
462 |
Q |
| |
|
|| || || ||| ||| ||||| || || || ||||||||||||| || ||||| |
|
|
| T |
29129 |
gagggaccatcacaagcatgaacgtaatacacgttaccaggttgttgcgatggatc |
29184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 576 - 630
Target Start/End: Original strand, 18929 - 18983
Alignment:
| Q |
576 |
aacgatgcgcaacagagcttagaaatgctctgataccatcttaaagttcaccatt |
630 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| |||| ||||||||| |
|
|
| T |
18929 |
aacgatgcgcaacagagcttagagaagctctgataccatcataaacttcaccatt |
18983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 576 - 630
Target Start/End: Original strand, 29309 - 29363
Alignment:
| Q |
576 |
aacgatgcgcaacagagcttagaaatgctctgataccatcttaaagttcaccatt |
630 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| |||| ||||||||| |
|
|
| T |
29309 |
aacgatgcgcaacagagcttagagaagctctgataccatcataaacttcaccatt |
29363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 3e-35; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 146 - 366
Target Start/End: Original strand, 29155435 - 29155655
Alignment:
| Q |
146 |
ttgagttcgttccaaacatcaattgcgttatccagaaaaacaatactttgcgcaattgaagtttcaacagaattcatgatccaggagtggattaacatgt |
245 |
Q |
| |
|
|||||||||||||||||||| || | || || ||||||||||| || || ||||||||| || |||| ||||||||||||| || || | | ||||| |
|
|
| T |
29155435 |
ttgagttcgttccaaacatccataacattctcaagaaaaacaatgctctgtgcaattgaatcttgaacaaaattcatgatccaagaatgcacaagcatgt |
29155534 |
T |
|
| Q |
246 |
tgcaacggttccacgccttgaaactaggatcaaactccatgggaaccggaatggatccatcaacgaaatcgaatttgttcttcgctcccaacgctcttcg |
345 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| || | ||||| ||||| ||||||||||| ||||||||||| ||||| |||| || |||||||| |
|
|
| T |
29155535 |
tgcaacgatttcacgccttgaaactaggatcaaattcagtaggaactggaattgatccatcaacaaaatcgaatttattctttcctcctaaggctcttcg |
29155634 |
T |
|
| Q |
346 |
catcgaacgagcccaagaatg |
366 |
Q |
| |
|
||| ||||| ||||| ||||| |
|
|
| T |
29155635 |
cattgaacgcgcccatgaatg |
29155655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 26131984 - 26131853
Alignment:
| Q |
7 |
aagataagcttcaagttcttcccaaagaaccttcaaagcagtaaagaattcagaaaccgaacgcgaatcttgcttcaaaccaaagatttcacactgcaat |
106 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||| | ||| || || |||||||| |||||||||||||||||||| ||||||||||| || || ||| |
|
|
| T |
26131984 |
aagatatgcttcaagttcttcccatagaaccttcaatgtagtgaaaaactcagaaactgaacgcgaatcttgcttcaatccaaagatttcgcattgtaat |
26131885 |
T |
|
| Q |
107 |
tcagaaatctgaatgtaatctccttgtgaaaa |
138 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||| |
|
|
| T |
26131884 |
tcagaaatacgaatgtaatcaccttgagaaaa |
26131853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 161 - 375
Target Start/End: Complemental strand, 26129630 - 26129416
Alignment:
| Q |
161 |
acatcaattgcgttatccagaaaaacaatactttgcgcaattgaagtttcaacagaattcatgatccaggagtggattaacatgttgcaacggttccacg |
260 |
Q |
| |
|
||||| || ||||| || ||||| |||||||| || ||||| ||| ||||||||||||||||||||| || || | | |||||| ||||| ||||| | |
|
|
| T |
26129630 |
acatccatggcgttctcaagaaacacaatactctgtgcaatagaatcttcaacagaattcatgatccatgaatgcacaagcatgttacaacgattccatg |
26129531 |
T |
|
| Q |
261 |
ccttgaaactaggatcaaactccatgggaaccggaatggatccatcaacgaaatcgaatttgttcttcgctcccaacgctcttcgcatcgaacgagccca |
360 |
Q |
| |
|
| |||||||| |||||||| ||||| ||||| ||||| |||||||| || ||||| || |||||||| |||| || ||||||| ||| ||||| ||||| |
|
|
| T |
26129530 |
ctttgaaacttggatcaaattccataggaactggaattgatccatccacaaaatcaaacttgttctttcctcctaaagctcttctcattgaacgcgccca |
26129431 |
T |
|
| Q |
361 |
agaatggtaatttga |
375 |
Q |
| |
|
||| || |||||||| |
|
|
| T |
26129430 |
agagtgataatttga |
26129416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 6340567 - 6340529
Alignment:
| Q |
292 |
cggaatggatccatcaacgaaatcgaatttgttcttcgc |
330 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6340567 |
cggaatggatccatcaacgaaggcgaatttgttcttcgc |
6340529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 295 - 372
Target Start/End: Original strand, 25422905 - 25422982
Alignment:
| Q |
295 |
aatggatccatcaacgaaatcgaatttgttcttcgctcccaacgctcttcgcatcgaacgagcccaagaatggtaatt |
372 |
Q |
| |
|
|||||||||||||||||| || ||||| | ||| | ||||| | ||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
25422905 |
aatggatccatcaacgaattcaaatttcattttcccacccaaagttctacgcatggaacgagcccaagaatgataatt |
25422982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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