View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5779-Insertion-6 (Length: 534)
Name: NF5779-Insertion-6
Description: NF5779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5779-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 11 - 534
Target Start/End: Original strand, 45408855 - 45409377
Alignment:
| Q |
11 |
ataaatgtaagtaaacaaaattaagagagaatacaggtgagcatgtatgtaatttgcatagaaatggttgagctatgctaagtggtaatatactagagta |
110 |
Q |
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| T |
45408855 |
ataaatgtaagtaaacaaaattaagagagaatacaggtgagcatgtatgtaatttgcatagaagtggttgagctatgctaagtggtaatatactagagta |
45408954 |
T |
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| Q |
111 |
ccatatacagagcaaaagcttcacttgagaggtaagattgtcagctatctagaattgacacatacaactggaaaaaggttcaaaaaataatattgaacac |
210 |
Q |
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| T |
45408955 |
ccatatacagagcaaaagcttcacttgagaggtaagattgtcagctatctagaattgacacatacaactggaaaaaggttcaaaaaataatattgaacac |
45409054 |
T |
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| Q |
211 |
tcattattagtattgtgttctactctattgtgtatttagcatatgataccttccttaaggtttatgctagcttaaccatttcaaatgctactaatccaat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45409055 |
tcattattagtattgtgttctactctattgtgtatttagcatatgataccttccttaaggtttatgctagcttaaccatttcaaatgctaccaatccaat |
45409154 |
T |
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| Q |
311 |
ccgtgattaaggtcccataaacactgtcggtggtagataatagagtgattagccttacacgtgcttaatagtttagacagagcttccctttgctcacctc |
410 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45409155 |
ccgtgattaa-gtcccataaacactgtcggtggtagataatagagtgattagccttacacgtgcttaatagtttagacagagcttccctttgctcacctc |
45409253 |
T |
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| Q |
411 |
tttaacaacctctacttagcnnnnnnnnnnnnnnnnnnaatcatatcatagatctagattcatttcgtgtctattgtcttaaatttcaaactacccctga |
510 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45409254 |
tttaacaacctctacttagctttttatttttattttttaatcatatcatagatctagattcatttcgtgtctattgtcttaaatttcaaactacccctga |
45409353 |
T |
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| Q |
511 |
aattacttttggacaattataaat |
534 |
Q |
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| T |
45409354 |
aattacttttggacaattataaat |
45409377 |
T |
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