View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5779-Insertion-7 (Length: 478)

Name: NF5779-Insertion-7
Description: NF5779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5779-Insertion-7
NF5779-Insertion-7
[»] chr6 (9 HSPs)
chr6 (8-284)||(16873251-16873527)
chr6 (182-284)||(16571425-16571527)
chr6 (289-353)||(16873556-16873620)
chr6 (7-52)||(16579937-16579982)
chr6 (7-52)||(16615398-16615443)
chr6 (439-477)||(16783788-16783826)
chr6 (300-353)||(16571563-16571616)
chr6 (7-58)||(16571366-16571417)
chr6 (424-470)||(16832437-16832483)
[»] chr2 (7 HSPs)
chr2 (7-284)||(21627600-21627882)
chr2 (63-284)||(235793-236014)
chr2 (7-114)||(32791449-32791556)
chr2 (289-353)||(32791652-32791716)
chr2 (289-353)||(21627911-21627975)
chr2 (402-433)||(21628173-21628204)
chr2 (221-284)||(32791561-32791623)
[»] scaffold0256 (6 HSPs)
scaffold0256 (7-284)||(14422-14699)
scaffold0256 (185-284)||(12192-12291)
scaffold0256 (289-353)||(12099-12163)
scaffold0256 (7-68)||(12293-12354)
scaffold0256 (402-433)||(11906-11937)
scaffold0256 (428-478)||(11825-11875)
[»] chr7 (2 HSPs)
chr7 (54-284)||(48300216-48300446)
chr7 (289-356)||(48300120-48300187)
[»] chr1 (1 HSPs)
chr1 (63-280)||(7389791-7390008)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 16873251 - 16873527
Alignment:
Q  8 caaacctcaagaggtttaagatgcaatgagaacattggttgagccagagaacagtaggaccttaatggatggattagtgttactaatatacaaatatgga 107  Q
    |||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16873251 caaacctcaagaggtttatgatgcattgagaacattggttgagccggagaacagcaggaccttaatggatggattagtgttactaatatacaaatatgga 16873350  T
Q  108 gatgagcacgataaagcacttgcaattctttgtcacatacatcaccagtctcatcatgatgtgttcactaaatcccgtgatctgttgcttaagagtcatt 207  Q
    || ||||  ||||||||||||||||| |||||||| ||||||||||| ||||||||||||| |||||||||| |||||||||||||||||| ||||||||    
T  16873351 gacgagcctgataaagcacttgcaatgctttgtcatatacatcaccattctcatcatgatgagttcactaaagcccgtgatctgttgcttacgagtcatt 16873450  T
Q  208 tgcaagaaaatgttcaccacatggacgatttaacatggatactttttaacagagctatgtcacaattaggtctatgt 284  Q
    | |||||||||| |||||||||||||| || ||||  ||||| ||||||||| ||||||||||| ||||| ||||||    
T  16873451 tacaagaaaatggtcaccacatggacgtttcaacacagatacgttttaacagggctatgtcacagttaggcctatgt 16873527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 182 - 284
Target Start/End: Original strand, 16571425 - 16571527
Alignment:
Q  182 ccgtgatctgttgcttaagagtcatttgcaagaaaatgttcaccacatggacgatttaacatggatactttttaacagagctatgtcacaattaggtcta 281  Q
    |||||||||||||| || || |||||||||||||| ||||||||||| ||||| || ||||  ||||| ||||||||| ||||||||||| ||||| |||    
T  16571425 ccgtgatctgttgcgtatgaatcatttgcaagaaactgttcaccacaaggacgtttcaacacagatacattttaacagggctatgtcacagttaggccta 16571524  T
Q  282 tgt 284  Q
    |||    
T  16571525 tgt 16571527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 16873556 - 16873620
Alignment:
Q  289 cacatgactgtctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtt 353  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||| |||| | ||||||||||    
T  16873556 cacatgactgtctgtctgaactttatttcggtggaaggttgaaagaattgcttgcacaaggagtt 16873620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 16579937 - 16579982
Alignment:
Q  7 acaaacctcaagaggtttaagatgcaatgagaacattggttgagcc 52  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||    
T  16579937 acaaacctcaagaggtttatgatgcaatgacaacattggttgagcc 16579982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 16615443 - 16615398
Alignment:
Q  7 acaaacctcaagaggtttaagatgcaatgagaacattggttgagcc 52  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||    
T  16615443 acaaacctcaagaggtttatgatgcaatgacaacattggttgagcc 16615398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 477
Target Start/End: Complemental strand, 16783826 - 16783788
Alignment:
Q  439 agaaatttgatttgattattggctgcatattgctctgtt 477  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  16783826 agaaatttgatttgattattgcctgcatattgctctgtt 16783788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 16571563 - 16571616
Alignment:
Q  300 ctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtt 353  Q
    |||||| |||||||||| | |||||||||||||||| |||||| ||||||||||    
T  16571563 ctgtctgaactttattctgctggaaggttgaaagaattgctcgcacaaggagtt 16571616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 16571366 - 16571417
Alignment:
Q  7 acaaacctcaagaggtttaagatgcaatgagaacattggttgagccagagaa 58  Q
    |||||||||||||||||||||  |||||||||||||||| ||| || |||||    
T  16571366 acaaacctcaagaggtttaagtggcaatgagaacattggctgacccggagaa 16571417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 470
Target Start/End: Complemental strand, 16832483 - 16832437
Alignment:
Q  424 attgcagttttgaatagaaatttgatttgattattggctgcatattg 470  Q
    ||||||||| |||| |||||||||||||||||||| | |||||||||    
T  16832483 attgcagttatgaacagaaatttgatttgattattagttgcatattg 16832437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 3e-77; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 21627600 - 21627882
Alignment:
Q  7 acaaacctcaagaggtttaagatgcaatgagaacattggttgagccagagaacagtaggaccttaatggatggattagtgttactaatatacaaatatgg 106  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  21627600 acaaacctcaagaggtttacgatgcaatgagaacattggctgagccggagaacagtaggaccttaatggatggattagtgtcactaatatacaaatacgg 21627699  T
Q  107 agatgagcacgataaagcacttgcaattctttgtcacatacatcaccagtctcatcatgatgtgttcactaaatcccgtgatctgttgcttaagagtcat 206  Q
    ||| |||| |  | |||||| |||||| |||||| | ||| |||||||  ||| |||| ||| |||||||||| || ||||||||||||||| |||||||    
T  21627700 agacgagcgcattcaagcacgtgcaatgctttgtgatatatatcaccatgctcttcatcatgagttcactaaagcctgtgatctgttgcttatgagtcat 21627799  T
Q  207 ttgcaagaaaatgttcaccacatggacgatttaacatggatact-----ttttaacagagctatgtcacaattaggtctatgt 284  Q
    |||||||||||||||||||||||||||| || ||||  ||||||     ||||||||| ||||||||||| ||||||||||||    
T  21627800 ttgcaagaaaatgttcaccacatggacgtttcaacacagatactttttattttaacagggctatgtcacagttaggtctatgt 21627882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 63 - 284
Target Start/End: Complemental strand, 236014 - 235793
Alignment:
Q  63 aggaccttaatggatggattagtgttactaatatacaaatatggagatgagcacgataaagcacttgcaattctttgtcacatacatcaccagtctcatc 162  Q
    ||||||||||||||||  ||||| | ||| ||||||||||| |||||||||| |  ||||||||  ||||| |||||| | ||| |||||||  ||| ||    
T  236014 aggaccttaatggatgtgttagtatcactgatatacaaatacggagatgagcgcactaaagcacgcgcaatgctttgtgatatatatcaccatgctcttc 235915  T
Q  163 atgatgtgttcactaaatcccgtgatctgttgcttaagagtcatttgcaagaaaatgttcaccacatggacgatttaacatggatactttttaacagagc 262  Q
     ||| | ||||||   | |||||||| ||||||||| ||||||||||||||||||||||||||||||||||  ||  |||   |||||||||||||| ||    
T  235914 ttgacgagttcacagtagcccgtgatttgttgcttatgagtcatttgcaagaaaatgttcaccacatggacatttcgacacaaatactttttaacagggc 235815  T
Q  263 tatgtcacaattaggtctatgt 284  Q
    ||||||||| ||||||||||||    
T  235814 tatgtcacagttaggtctatgt 235793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 32791449 - 32791556
Alignment:
Q  7 acaaacctcaagaggtttaagatgcaatgagaacattggttgagccagagaacagtaggaccttaatggatggattagtgttactaatatacaaatatgg 106  Q
    |||||| |||||||||||| ||| ||||||||||||| | |||||  |||||||| |||| |||||||||||||||||||| ||||||||||||||| ||    
T  32791449 acaaacttcaagaggtttacgatacaatgagaacattagctgagctggagaacagcaggaacttaatggatggattagtgtcactaatatacaaatacgg 32791548  T
Q  107 agatgagc 114  Q
    ||| ||||    
T  32791549 agacgagc 32791556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 32791652 - 32791716
Alignment:
Q  289 cacatgactgtctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtt 353  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||| |||||| ||||||||||    
T  32791652 cacatgactgtctgtctgaactttatcccggtggaagggtgaaagaattgctcgcacaaggagtt 32791716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 21627911 - 21627975
Alignment:
Q  289 cacatgactgtctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtt 353  Q
    ||||||| ||||||||| |||||||| ||||||||||| ||| |||| |||||| ||||||||||    
T  21627911 cacatgaatgtctgtctgaactttatcccggtggaagggtgagagaattgctcgcacaaggagtt 21627975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 433
Target Start/End: Original strand, 21628173 - 21628204
Alignment:
Q  402 tttaaaatcaatgttgatctgaattgcagttt 433  Q
    ||||||||||||||||||||||||||||||||    
T  21628173 tttaaaatcaatgttgatctgaattgcagttt 21628204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 32791561 - 32791623
Alignment:
Q  221 tcaccacatggacgatttaacatggatactttttaacagagctatgtcacaattaggtctatgt 284  Q
    |||||||||||||| || ||||  ||||||||||||||| ||||||||||  ||||||||||||    
T  32791561 tcaccacatggacgtttcaacacagatactttttaacagggctatgtcac-gttaggtctatgt 32791623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 98; Significance: 4e-48; HSPs: 6)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 7 - 284
Target Start/End: Complemental strand, 14699 - 14422
Alignment:
Q  7 acaaacctcaagaggtttaagatgcaatgagaacattggttgagccagagaacagtaggaccttaatggatggattagtgttactaatatacaaatatgg 106  Q
    ||||||||||||| ||||| || ||||| |||||||||| |||||| ||||| || |||||||||||||||  |||||||  |||||| |||||||| |     
T  14699 acaaacctcaagatgtttacgaggcaattagaacattggctgagccggagaatagcaggaccttaatggatatattagtgacactaatctacaaatacgc 14600  T
Q  107 agatgagcacgataaagcacttgcaattctttgtcacatacatcaccagtctcatcatgatgtgttcactaaatcccgtgatctgttgcttaagagtcat 206  Q
    ||| ||   |  |||||||| |||||| ||| || | ||| |||||||   || |||||||| |||| ||||| |||||||||||||||||| |||||||    
T  14599 agacgactgcactaaagcacgtgcaatgcttagtgatatatatcaccatgttcttcatgatgagttcgctaaaccccgtgatctgttgcttatgagtcat 14500  T
Q  207 ttgcaagaaaatgttcaccacatggacgatttaacatggatactttttaacagagctatgtcacaattaggtctatgt 284  Q
    ||| |||||||||| ||||||||||||| || ||||  ||||| || |||||| |||||||||||||||||| |||||    
T  14499 ttgaaagaaaatgtgcaccacatggacgtttcaacacagatacattctaacagggctatgtcacaattaggtgtatgt 14422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 185 - 284
Target Start/End: Complemental strand, 12291 - 12192
Alignment:
Q  185 tgatctgttgcttaagagtcatttgcaagaaaatgttcaccacatggacgatttaacatggatactttttaacagagctatgtcacaattaggtctatgt 284  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||| || ||||  ||||| ||||||||| ||||||||| | ||||| ||||||    
T  12291 tgatctgttgctcatgagtcatttgcaagaaaatgttcaccacatggacgtttcaacacagatacgttttaacagggctatgtcatagttaggcctatgt 12192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 289 - 353
Target Start/End: Complemental strand, 12163 - 12099
Alignment:
Q  289 cacatgactgtctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtt 353  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  12163 cacatgactgtcagtctgaactttattccggtggaaggttgaaagaattgctcatacaaggagtt 12099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 12354 - 12293
Alignment:
Q  7 acaaacctcaagaggtttaagatgcaatgagaacattggttgagccagagaacagtaggacc 68  Q
    ||||| |||||||||||||||| |||||||||||||||| ||| || |||||||| ||||||    
T  12354 acaaatctcaagaggtttaagaggcaatgagaacattggctgacccggagaacagcaggacc 12293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 433
Target Start/End: Complemental strand, 11937 - 11906
Alignment:
Q  402 tttaaaatcaatgttgatctgaattgcagttt 433  Q
    ||||||||||||||||||||||||||||||||    
T  11937 tttaaaatcaatgttgatctgaattgcagttt 11906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 478
Target Start/End: Complemental strand, 11875 - 11825
Alignment:
Q  428 cagttttgaatagaaatttgatttgattattggctgcatattgctctgttc 478  Q
    |||||||||| ||||||||||||||| ||||  ||||||||||| ||||||    
T  11875 cagttttgaacagaaatttgatttgaatattaactgcatattgccctgttc 11825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 54 - 284
Target Start/End: Complemental strand, 48300446 - 48300216
Alignment:
Q  54 gagaacagtaggaccttaatggatggattagtgttactaatatacaaatatggagatgagcacgataaagcacttgcaattctttgtcacatacatcacc 153  Q
    ||||| || ||||||||||||||||  || || | ||||||||||||||| |||||||||| |  ||||||||  ||||| |||||| | ||| ||||||    
T  48300446 gagaatagcaggaccttaatggatgtgttggtatcactaatatacaaatacggagatgagcgcactaaagcacgcgcaatgctttgtgatatatatcacc 48300347  T
Q  154 agtctcatcatgatgtgttcactaaatcccgtgatctgttgcttaagagtcatttgcaagaaaatgttcaccacatggacgatttaacatggatactttt 253  Q
    |  ||| ||  |||| |||  |     |||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||  |||  |||||| ||    
T  48300346 atgctcttctagatgagtttgcagttgcccgtgatctgttgcttatgagtcatttgcaagaaaatgttcaccacatggacatttcgacacagatactctt 48300247  T
Q  254 taacagagctatgtcacaattaggtctatgt 284  Q
    |||||| ||||||||||| ||||||||||||    
T  48300246 taacagggctatgtcacagttaggtctatgt 48300216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 48300187 - 48300120
Alignment:
Q  289 cacatgactgtctgtctcaactttattccggtggaaggttgaaagaactgctcgtacaaggagtttca 356  Q
    |||||| |||| ||||| |||||||||| |||||| || ||||||||||||| | |||||||||||||    
T  48300187 cacatggctgtttgtctgaactttattctggtggacgggtgaaagaactgcttgcacaaggagtttca 48300120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 63 - 280
Target Start/End: Original strand, 7389791 - 7390008
Alignment:
Q  63 aggaccttaatggatggattagtgttactaatatacaaatatggagatgagcacgataaagcacttgcaattctttgtcacatacatcaccagtctcatc 162  Q
    ||||||||||||||||  ||||| | ||| ||||| ||||| |||||||||| |  ||||||||  ||||| |||||| | ||| |||||||  ||| ||    
T  7389791 aggaccttaatggatgtgttagtatcactgatatataaatacggagatgagcgcactaaagcacgcgcaatgctttgtgatatatatcaccatgctcttc 7389890  T
Q  163 atgatgtgttcactaaatcccgtgatctgttgcttaagagtcatttgcaagaaaatgttcaccacatggacgatttaacatggatactttttaacagagc 262  Q
     ||||| |||  |   | |||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||  |||   |||||||||||||| ||    
T  7389891 ttgatgagtttgcagtagcccgtgatctgttgcttatgagtcatttgcaagaaaatgttcaccacatggacatttcgacacaaatactttttaacagggc 7389990  T
Q  263 tatgtcacaattaggtct 280  Q
    ||||||||| ||||||||    
T  7389991 tatgtcacagttaggtct 7390008  T

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