View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5779-Insertion-8 (Length: 448)
Name: NF5779-Insertion-8
Description: NF5779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5779-Insertion-8 |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 29009007 - 29009272
Alignment:
| Q |
8 |
aatataacaccgtaacagtgtcaaatgaaattgaagaattagtttcagtgaaaatagtagcgtgcaaatgcaaattatatagaaatgtgaaggtgaattt |
107 |
Q |
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| T |
29009007 |
aatacaacaccgtaacagtatcaaatgcaattgaagaattagtttcagtgaaaattgtagcgtgcaaatgcaaattatatagaaatgtgaaggtgaattt |
29009106 |
T |
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| Q |
108 |
gaataaaatgaaaccagaatcggaatttgaagaatttaatcaagaagttgaagcgaacatatatgatctttgcgcggttgaagagtttgttatgaattca |
207 |
Q |
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| T |
29009107 |
gaataaaatgaaaccagaatcggaatttgaagaatgtaatcaagaagttgaagcgaacctatatgatctttgcgcggttgaagagtttgttatgaattca |
29009206 |
T |
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| Q |
208 |
gaacagagaatttggttatgtacctgcaaattcagaaagtgaaatctcagagcaatgaagaagaag |
273 |
Q |
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| T |
29009207 |
gaacagagaatgtggttatgtacctgcaaattcagaaagtgaaatctcagagcaatgaagaagaag |
29009272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 379 - 448
Target Start/End: Original strand, 29009481 - 29009550
Alignment:
| Q |
379 |
agggttttcgcgcctttatacagagtgatgagaattttggtttcgttttctgttatggagagtaaacttg |
448 |
Q |
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| T |
29009481 |
agggttttcgcgcctttatacagagtgatgagaattttggtttcgttttctgttacggagagtaaacttg |
29009550 |
T |
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