View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5779_low_1 (Length: 393)
Name: NF5779_low_1
Description: NF5779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5779_low_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 39664122 - 39663746
Alignment:
| Q |
17 |
accaaatgcatcaaaatcaaagccgaagatctaagtcaagctcatgtgtatctgattcttgcattcgaaagcttccatgccatacgaaatccccagcatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39664122 |
accaaatgcatcaaaatcaaagccgaagatctaagtcaagctcatgtgtatctgattcttgcattcgaaagcttccataccatacgaaatccccagcatg |
39664023 |
T |
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| Q |
117 |
ttcaagaccaaggggtgccaatgtcgttccaataaaagaatcggcatcattatttaatcgagcttccaccatagctctttctctgattggcttgtgcaca |
216 |
Q |
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| T |
39664022 |
ttcaagaccaaggggtgccaatgtcgttccaataaaagaatcggcatcattatttaatcgagcttccaccatagctctttctctgattggcttgtgcaca |
39663923 |
T |
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| Q |
217 |
agagaatgaggttggattcctagtgatcgagatgccaaagagttttgagataattggtaatttctagctgcttctctttcccttttgtgtgcattttggt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39663922 |
agagaatgaggttggattcctagtgatcgagatgccaaagagttttgagataattggtaatttctagctgcttctctttcccttttgtgtgcattttggt |
39663823 |
T |
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| Q |
317 |
gaccccctaaggcttgtgaattgaaaaactttctcatgcagaagttgcatgagtatgtctttttgttgtgaagaggt |
393 |
Q |
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| T |
39663822 |
gaccccctaaggcttgtgaattgtaaaactttctcatgcagaagttgcatgagtatgtctttttgttgtgaagaggt |
39663746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 361 - 393
Target Start/End: Complemental strand, 39663745 - 39663713
Alignment:
| Q |
361 |
ttgcatgagtatgtctttttgttgtgaagaggt |
393 |
Q |
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| T |
39663745 |
ttgcatgaatatgtctttttgttgtgaagaggt |
39663713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 31519976 - 31520013
Alignment:
| Q |
301 |
ttgtgtgcattttggtgaccccctaaggcttgtgaatt |
338 |
Q |
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| T |
31519976 |
ttgtgtgcattttggtgtcctcctaaggcttgtgaatt |
31520013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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